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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC3_p9 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 279aa MW: 32025.4 Da PI: 4.754 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3_p9 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51 | 3.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W+++Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
RrC3_p9 16 RGPWSQDEDLKLISFIHKYGHENWRSLPNQAGLLRCGKSCRLRWINYL 63
89******************************99************97 PP
|
| 2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 69 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
RrC3_p9 69 RGNFTLEEEETIIKLHQSFGNKsMWSKIASKLP-GRTDNEIKNVWHTHL 116
89*******************************.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009809 | Biological Process | lignin biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MGKGRAPCCD KTKVKRGPWS QDEDLKLISF IHKYGHENWR SLPNQAGLLR CGKSCRLRWI 60
NYLRPDLKRG NFTLEEEETI IKLHQSFGNK SMWSKIASKL PGRTDNEIKN VWHTHLKKRL 120
SSYINHNASD EAATKGSLNR EETSQESSPN ASRSFGGSNI VSKEDDDVQI GETFECFQDY 180
SELAGMLQEV DKPELLEIPF DIDPDVWNFI DGFQQPENSL TPRAHQESEE AEVDKWFKNL 240
ESELGLEEDN SQQQEQPNEA KEESPSPSLL ESYELLINH
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM975654 | 0.0 | KM975654.1 Brassica napus MYB transcription factor 58.1 (MYB58.1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
J. Plant Physiol., 2015. 175: p. 86-94
[PMID:25506770] - Noda S, et al.
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
Planta, 2015. 242(3): p. 589-600
[PMID:26070439] - Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
J. Plant Res., 2018. 131(2): p. 297-305
[PMID:28921082]
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