PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3978_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 129aa    MW: 14837 Da    PI: 9.932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3978_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.52.7e-23119250128
         NAM  50 kvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 k+k+++  wyfF++r+  ++    ++k ++r+t sgyWkatg d+++ + kg ++g+kktLv+++g++ +g+ t Wv+he+++
  RrC3978_p1  11 KLKSKDLVWYFFCRRECYASnaadKKKGTKRTTPSGYWKATGVDRKIRN-KGVEIGIKKTLVYHEGKSANGVWTPWVIHEFHI 92 
                 56777889******98655533335667889999**************9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4761110IPR003441NAC domain
SuperFamilySSF1019419.02E-261297IPR003441NAC domain
PfamPF023655.5E-131992IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSKTRERALS KLKSKDLVWY FFCRRECYAS NAADKKKGTK RTTPSGYWKA TGVDRKIRNK  60
GVEIGIKKTL VYHEGKSANG VWTPWVIHEF HITSLPPAQL NWSYVPYFLD LLDVDMGFDS  120
SVSDLVDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-131910373151NO APICAL MERISTEM PROTEIN
1ut4_B3e-131910373151NO APICAL MERISTEM PROTEIN
1ut7_A3e-131910373151NO APICAL MERISTEM PROTEIN
1ut7_B3e-131910373151NO APICAL MERISTEM PROTEIN
3swm_A3e-131910376154NAC domain-containing protein 19
3swm_B3e-131910376154NAC domain-containing protein 19
3swm_C3e-131910376154NAC domain-containing protein 19
3swm_D3e-131910376154NAC domain-containing protein 19
3swp_A3e-131910376154NAC domain-containing protein 19
3swp_B3e-131910376154NAC domain-containing protein 19
3swp_C3e-131910376154NAC domain-containing protein 19
3swp_D3e-131910376154NAC domain-containing protein 19
4dul_A3e-131910373151NAC domain-containing protein 19
4dul_B3e-131910373151NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457690.16e-63PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1269e-34NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A397XPX46e-49A0A397XPX4_BRACM; Uncharacterized protein
STRINGBra036326.1-P4e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.14e-36NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]