PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3960_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 264aa    MW: 30240.6 Da    PI: 8.5506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3960_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1375127155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +r++h e+Er+RR+++ s f  Lr +lP       ++K s ++ + +Av+YIk+L+
  RrC3960_p2  75 KRAKHREIERQRRQEVTSLFKHLRYILPVqY---VKGKRSSSDHVHEAVNYIKDLE 127
                 79***************************66...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.43E-972131No hitNo description
SuperFamilySSF474591.44E-1472147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.21174126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1175127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1175144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAFPSSSSFS VDFAYKNELD FSSLLTPSTF VSFQEHTPSN PIIHCARTEN DGRQRIRERI  60
MPDEITKEDV EPKNKRAKHR EIERQRRQEV TSLFKHLRYI LPVQYVKGKR SSSDHVHEAV  120
NYIKDLEKKI KEVSEKRDRI KRSITHPSPA GYCPIRSLAA SCSSSSSSSN CFCVGDTHVD  180
VKVRTCLVGI EIVASCCFRH ESRLSSVLQL LVQEQCFDVV SCISTRLYSR FLHTIVCEVE  240
KGIEINFSEL REKIIKMGTS CLNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KRAKHREIERQRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463245.11e-172PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-124BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A3P5YDB81e-149A0A3P5YDB8_BRACM; Uncharacterized protein
STRINGBo5g016800.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-114bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]