PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC39330_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 60aa    MW: 6721.86 Da    PI: 10.7083
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC39330_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.7e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  RrC39330_p1  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKVYDFSS 59
                 78***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-29259IPR002100Transcription factor, MADS-box
CDDcd002651.88E-36259No hitNo description
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.4E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKVYDFSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19159159MEF2C
5f28_B1e-19159159MEF2C
5f28_C1e-19159159MEF2C
5f28_D1e-19159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892317e-77AC189231.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013M01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486852.15e-35PREDICTED: agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K88e-34AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A1J3D0Q23e-34A0A1J3D0Q2_NOCCA; Agamous-like MADS-box protein AGL18 (Fragment)
TrEMBLM4CGE57e-35M4CGE5_BRARP; Uncharacterized protein
STRINGBra003278.1-P1e-35(Brassica rapa)
STRINGBo6g072840.13e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-36AGAMOUS-like 18