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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3848_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 42645.1 Da PI: 7.4997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 284 | 322 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L RrC3848_p1 284 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 322 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.29 | 273 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0071 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-9 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-6 | 283 | 326 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-11 | 283 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MPFITHNTQT LDKSNNDLGF QATSAICGSG GAWWNSPRSV MSPSDNFLSP CFRAAITSDE 60 FGCQENNIKS RNTCTDNNII FGQREADSDS GGSTVTIDST MQMMGLGFAS NSSSDWKHTI 120 LREDLNSSLL RSSQDHGPGF LSTTTSPYLL NPACSSSSSI SYSSSLLRTF YDPEPNPYSF 180 VSTTSCSIND PQVSWANNTT NPHHQAAYGL ISNFSNNINS RPLSKTTQNS FATTPQIIST 240 RVEDKAKNQK TRGQSESLKR AKYNEPASKK QRASTPSPLP TFKVRKENLR DQITSLQQLV 300 SPFGKTDTAS VLQEAIEYIK FLHDQVTVLS TPYMKQGAPI HQQQQVGNEN QELRAHGLCL 360 VPISSTFPVA NETTADFWTP TFGGNNFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF380649 | 1e-115 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. | |||
GenBank | AY085602 | 1e-115 | AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence. | |||
GenBank | AY113072 | 1e-115 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433346.1 | 0.0 | PREDICTED: transcription factor bHLH112 isoform X1 | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A1J3CDX3 | 0.0 | A0A1J3CDX3_NOCCA; Uncharacterized protein | ||||
STRING | Bo1g098400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8062 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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