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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC3847_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB_related |
| Protein Properties |
Length: 193aa MW: 21244.7 Da PI: 5.1509 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3847_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 34 | 6.8e-11 | 1 | 28 | 18 | 47 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
++G++ W+tIar ++ gRt++ +k++w++
RrC3847_p1 1 KFGNK-WATIARLLN-GRTDNAVKNHWNST 28
68999.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 193 aa
Download sequence Send
to blast |
KFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKWLDGNLTA EEEGRDPAKK RRSMSSESVV 60
PPPVVDTGLY MSPESPNSDS STVPAQVFKP MPEVSPEEEE DPATALSLSL SLPGGDVSQE 120
SSQSSLLVPR FESQMRINVE ERGEGRRGEF MRVVHEMVKA EVRSYMAEMQ RNNGGGFVGG 180
GGFYDSGITP KIE
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 29 | 51 | KRKWLDGNLTAEEEGRDPAKKRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
