PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC3835_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 138aa MW: 15293.1 Da PI: 8.3519

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3835_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H RrC3835_p3 37 YECTFCKRGFTNAQALGGHMNIH 59 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.2E-5	34	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.68E-7	34	64	No hit	No description
SMART	SM00355	0.0097	37	59	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.136	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MQNMECDRSS SSTSSETGAV LHHLTSSSVS TVTRRMYECT FCKRGFTNAQ ALGGHMNIHR 60 RDRLNKAAKQ QNDADLALSS ARRCFHVASS DRGGYEQVES VALRTTTNLS LRIGSMVTRR 120 ENVVVEGDEI DLELRLGL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189591	1e-166	AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455078.1	3e-97	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A078H7R3	1e-83	A0A078H7R3_BRANA; BnaA09g16550D protein
TrEMBL	A0A3N6RDV7	1e-83	A0A3N6RDV7_BRACR; Uncharacterized protein
TrEMBL	A0A3P6E4L7	1e-83	A0A3P6E4L7_BRAOL; Uncharacterized protein
STRING	Bo9g059250.1	2e-83	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9168	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	3e-57	C2H2 family protein