PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC37_p11
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 313aa    MW: 33511.8 Da    PI: 6.5154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC37_p11genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.8e-09166210554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  RrC37_p11 166 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 210
                99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MATNNNNNNH NLSDQQPPSD DFFEQILGIS NFSASSGSGG LSALPGGLSG QPPMMLQLGS  60
GEEGSHNNHM GGGGGGGGPL GFHNGMFPLG LSLDQGKGGQ QGFLKPDGSG GKRFQDDVVG  120
VDNRCSSMKP VFHGQPMSQP PPPMPHQQSS IRPRVRARRG QATDPHSIAE RLRRERIAER  180
IRALQELVPT VNKTDRAAMI DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTEMPLSSS  240
VEDETQAVWE KWSDDGTERQ VAKLMEENVG AAMQLLQSKA LCIMPVSLAM AIYHSQPPDT  300
SSSVVKPEMN PPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439199.11e-180PREDICTED: transcription factor bHLH7
SwissprotQ93Y001e-157BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A3P6CQB71e-169A0A3P6CQB7_BRACM; Uncharacterized protein
TrEMBLM4EX331e-169M4EX33_BRARP; Uncharacterized protein
STRINGBra033368.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-126bHLH family protein