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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC3790_p2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 275aa MW: 29810.4 Da PI: 11.1903 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC3790_p2 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 185.5 | 2.1e-57 | 82 | 229 | 15 | 154 |
DUF702 15 akkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss......... 104
akk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + + ++ ++++ +k++r ++q+++s+t++s++ ++++l+tss
RrC3790_p2 82 AKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTRNPTAGSSPSTSSGTKKPRIA-GSQQQTTSHTSTSNT-PPQSLDTSSsrkdggpre 178
9*************************************99999988888888899999999987.566666777776666.566777777799****** PP
DUF702 105 .lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
lP +v+++avf+cv+v++++dg++e+aYq++v+igGh+fkG+LydqGle
RrC3790_p2 179 aLPGQVKAAAVFKCVKVTAMEDGDDEYAYQAVVKIGGHIFKGFLYDQGLEP 229
************************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MQRRHPSASE LFLFSQRLRR SSSIKTWKTP TLTSSETAGD GRTTTAATTR RSIFGSRVRL 60 WHRVRTTRGR AQREPPRVKT VAKKECKQRR CRTCCKSRGF DCSTHVKSTW VSAARRRERQ 120 VMPTRNPTAG SSPSTSSGTK KPRIAGSQQQ TTSHTSTSNT PPQSLDTSSS RKDGGPREAL 180 PGQVKAAAVF KCVKVTAMED GDDEYAYQAV VKIGGHIFKG FLYDQGLEPK EGFPNISDLH 240 LGGGASNHNG VSASPPILDP PNVYGGGGAG AGFYG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205266 | 0.0 | GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G12330.2 | 4e-78 | Lateral root primordium (LRP) protein-related |