PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3790_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 275aa    MW: 29810.4 Da    PI: 11.1903
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3790_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702185.52.1e-578222915154
      DUF702  15 akkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss......... 104
                 akk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + +   +  ++ ++++ +k++r    ++q+++s+t++s++ ++++l+tss         
  RrC3790_p2  82 AKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTRNPTAGSSPSTSSGTKKPRIA-GSQQQTTSHTSTSNT-PPQSLDTSSsrkdggpre 178
                 9*************************************99999988888888899999999987.566666777776666.566777777799****** PP

      DUF702 105 .lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  lP +v+++avf+cv+v++++dg++e+aYq++v+igGh+fkG+LydqGle 
  RrC3790_p2 179 aLPGQVKAAAVFKCVKVTAMEDGDDEYAYQAVVKIGGHIFKGFLYDQGLEP 229
                 ************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-5281228IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.0E-2082116IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.0E-29180227IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQRRHPSASE LFLFSQRLRR SSSIKTWKTP TLTSSETAGD GRTTTAATTR RSIFGSRVRL  60
WHRVRTTRGR AQREPPRVKT VAKKECKQRR CRTCCKSRGF DCSTHVKSTW VSAARRRERQ  120
VMPTRNPTAG SSPSTSSGTK KPRIAGSQQQ TTSHTSTSNT PPQSLDTSSS RKDGGPREAL  180
PGQVKAAAVF KCVKVTAMED GDDEYAYQAV VKIGGHIFKG FLYDQGLEPK EGFPNISDLH  240
LGGGASNHNG VSASPPILDP PNVYGGGGAG AGFYG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052660.0GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469892.11e-116PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-103LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1J3GIS91e-109A0A1J3GIS9_NOCCA; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1J3IG841e-109A0A1J3IG84_NOCCA; Protein LATERAL ROOT PRIMORDIUM 1
STRINGBostr.2902s0003.1.p1e-109(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-78Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]