PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 253aa MW: 28711 Da PI: 5.8602

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC378_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++G ++W++ ++ g+ R++k+c++rw +yl RrC378_p7 14 KGPWSAEEDRILISHIRLHGHPNWRALPQLAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.4	2.5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l RrC378_p7 67 RGNFTPQEEDTIINLHQSLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.09	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.48E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.32E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.431	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.67E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGRRPCCEKL GLKKGPWSAE EDRILISHIR LHGHPNWRAL PQLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEDTIIN LHQSLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRIQHNQ 120 DQNISEKICD NDEQLVSVMD EKRPSSPQQQ SSSSTNISAV TTSSNNNDVS INSSKDSATS 180 PEDVLPLIDE SFWSEVVSMD CNILGVENKE IKLEDWESSS LDSSIKGYNH DMESWFDNLL 240 TSNLTTGENS DIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269\|PubMed:16861809, ECO:0000269\|PubMed:9681014}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00127	DAP	Transfer from AT1G06180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269\|PubMed:9681014}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738279	0.0	KF738279.1 Brassica napus MYB transcription factor 13 (MYB13.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437032.1	0.0	PREDICTED: myb-related protein Myb4
Swissprot	Q9LNC9	1e-127	MYB13_ARATH; Transcription factor MYB13
TrEMBL	A0A078IEV8	1e-158	A0A078IEV8_BRANA; BnaA10g04120D protein
TrEMBL	A0A397XI72	1e-158	A0A397XI72_BRACM; Uncharacterized protein
STRING	Bra015481.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-106	myb domain protein 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156]