PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 162aa MW: 17923.4 Da PI: 10.3718

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3785_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	7e-18	28	76	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g RrC3785_p2 28 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 76 8***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.484	27	84	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-36	27	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-21	28	85	IPR016177	DNA-binding domain
CDD	cd00018	9.49E-26	28	86	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-29	28	85	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-11	28	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0010941	Biological Process	regulation of cell death
GO:0042742	Biological Process	defense response to bacterium
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MLQHGAAAME AGVVAADVAG GRKRDRPFKG IRMRKWGKWV AEIREPNKRS RLWLGSYSTP 60 EAAARAYDTA VFYLRGPTAT LNFPELMQST ERSSVQDMSA AAIRKKATEV GAEVDAYGMA 120 VMNSKRRRVF GQKGDYAGGL LERVDLNKLP YPENQDNDVV GK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-15	28	91	6	70	ATERF1
3gcc_A	2e-15	28	91	6	70	ATERF1
5wx9_A	8e-15	28	85	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00401	DAP	Transfer from AT3G50260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434782.1	1e-116	PREDICTED: ethylene-responsive transcription factor ERF011
Swissprot	Q9SNE1	2e-81	ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBL	A0A078FXJ4	1e-97	A0A078FXJ4_BRANA; BnaC08g21640D protein
TrEMBL	A0A0D3DRV8	1e-97	A0A0D3DRV8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FG54	1e-97	A0A3P6FG54_BRAOL; Uncharacterized protein
STRING	Bo8g079660.1	2e-98	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	7e-80	cooperatively regulated by ethylene and jasmonate 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shen PC,Hour AL,Liu LD Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis. Bot Stud, 2017. 58(1): p. 22 [PMID:28510204]