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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC3748_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 294aa MW: 32460.1 Da PI: 8.5611 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3748_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.1 | 7.3e-06 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F++ +L Hir H
RrC3748_p2 6 FVCKYCNKKFPSGKSLGGHIRIH 28
89*******************99 PP
|
| 2 | zf-C2H2 | 10.9 | 0.0015 | 64 | 82 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS
zf-C2H2 2 kCpdCgksFsrksnLkrHi 20
+C C+k+F ++ L +H+
RrC3748_p2 64 QCRVCSKRFCSSKALANHM 82
7*****************9 PP
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| 3 | zf-C2H2 | 11.9 | 0.00068 | 235 | 257 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C k++++ L H r+H
RrC3748_p2 235 HVCPICFKVYKSGQALGGHKRSH 257
79******************999 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 6.5E-5 | 4 | 29 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 3.8E-8 | 4 | 28 | No hit | No description |
| Pfam | PF13912 | 1.5E-7 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.032 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0056 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.8E-8 | 58 | 85 | No hit | No description |
| PROSITE profile | PS50157 | 8.6 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.12 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 8.22E-5 | 232 | 260 | No hit | No description |
| Pfam | PF13912 | 9.0E-10 | 234 | 257 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.912 | 235 | 262 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.39 | 235 | 257 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 237 | 257 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MEKKEFVCKY CNKKFPSGKS LGGHIRIHSP RSSLDLTGKH NNNKKRLVDE REMTPPLKQQ 60
QQQQCRVCSK RFCSSKALAN HMDCHNYATT SSSGPPAMMI KRSKKQHSNS DESFSIVSSS 120
ETVQGAKDLM FLHLGRKDYN FAVDSPVPES SENTSELSSG ELLTKDKVPA VADDDNSDDG 180
SSDDDYFMNG PKKSVSVGGS LRNTGFNSFS YGDELRKSPA VKRASGANKT SRGRHVCPIC 240
FKVYKSGQAL GGHKRSHTNT TIANQEDRIK HKAAAADMQF DLNLPAEEDS DDEE
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189429 | 2e-35 | AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence. |
