 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC3747_p3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 384aa MW: 42539 Da PI: 7.8975 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3747_p3 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 33.7 | 6.4e-11 | 126 | 149 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
e C+ f+r+G C++Gd C FaHg
RrC3747_p3 126 GEVCPEFRRGGDCSRGDDCEFAHG 149
689********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MDVVRPTVEI PPRKLLSSSK SFQAESSPRS SPRKHNWNNK INKISISEQE EDSFNEDNNN 60
NTTKDTKEYC YDSDTDDPYA SDHFRMFEFK IRRCTRSRSH DWTDCPFAHP GEKARRRDPR 120
RFQYSGEVCP EFRRGGDCSR GDDCEFAHGV FECWLHPIRY RTEACKDGKH CKRKVCFFAH 180
SPRQLRVLPP EGSSASASPG KNPCCLFCSS SPTSTLLGNL SHLSRSPSSS PPLSPANKAA 240
AFSRLRSCAA AGSINYKDVL SELVNSLDSI SLAEALQVSS SSPVSTPVSA AAAAFASSCG 300
LSNQRLHLQQ QQQQSSPLQF ALSPSTPSYL ASSPRSNFFS DDFTPRQRQM NDVTPHAAGR 360
DKTSSFEDGS CGDPDIGWVN DLLT
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC003027 | 1e-166 | AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence. |
| GenBank | AK117219 | 1e-166 | AK117219.1 Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06. |
| GenBank | BT005342 | 1e-166 | BT005342.1 Arabidopsis thaliana At1g03790 mRNA, complete cds. |
| GenBank | CP002684 | 1e-166 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
