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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC3706_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
MYB |
| Protein Properties |
Length: 482aa MW: 54615.9 Da PI: 5.4171 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3706_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.3 | 5.5e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed +l ++v+++G g+W+++ + g+ R++k+c++rw ++l
RrC3706_p2 19 KGPWTATEDAILTEYVRKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 66
79******************************************9986 PP
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| 2 | Myb_DNA-binding | 49.4 | 1e-15 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++++eE++ +++++++lG++ W++ a+ ++ gRt++++k++w++
RrC3706_p2 72 KGSFSPEEEKMIIELHARLGNK-WARMASQLP-GRTDNEIKNYWNT 115
799*******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 482 aa
Download sequence Send
to blast |
MDGGGETRVT EAKVRGMKKG PWTATEDAIL TEYVRKHGEG NWNAVQKNSG LFRCGKSCRL 60
RWANHLRPNL KKGSFSPEEE KMIIELHARL GNKWARMASQ LPGRTDNEIK NYWNTRMKRR 120
QRDGLPLYPQ ETQHQGVGND DDDQFEFNSF QFQNQDHGNH QNMLQYTNSS NTPSSSSSFS 180
SSSSQPSKRL CLDPLISSNP GLNQIPESPM NFPMFSYYNN SLENNHSLEN DNNQFLKHSS 240
SSSNEFCNPN QVIELPSENS DTNNTNRKDT DAMSYSSLLM GDHETKPSCF PFVLDNTLLE 300
LPSSKTPTHW FTSNTILDDG VHLDPPAGNS GLLDAVLEES QALSRRGNFN DSTVSSGGLG 360
EDQDKRVKMD WENRLINHNP SHLSSFETYP DFHKRYNEPT MEKEIVDDDD DILTSLLNNF 420
PSTTPLPDDW YGTKDIQTEV PPHGNHHDNN KVEPHKAQPS PSTVDHMASL GSCYWDIMPR 480
IF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. |
