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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC3699_p2 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
HD-ZIP |
| Protein Properties |
Length: 343aa MW: 39291.9 Da PI: 5.5784 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3699_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.6 | 5.8e-20 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k
RrC3699_p2 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 118
678899***********************************************998 PP
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| 2 | START | 46 | 1.5e-15 | 263 | 342 | 1 | 73 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWd 73
ela +a++elv++a+ ++p+Wv s e++ ++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+
RrC3699_p2 263 ELAVAAMEELVRMAQTGDPLWVPSDnavEILSEEEYFRTFPRGIGpkpigLRSEASRESTVVIMNHINLVEILMDVN-QWS 342
57899******************9999***************999********************************.**7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MYQPNMFESH HHMFDMTPKN SDNDLGLTGS REDDFETKSG AEVTMENPLE EELQDPNQRP 60
NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELN LEPLQVKFWF QNKRTQMKAQ 120
HERHENSILK SDNDKLRAEN NRYKDALNNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180
EIDRISAIAA KYVGKPLLTH SSSSFPQLTS SHHIPSRSLD LEVGNFGNTN TSQTGFLGDM 240
YGTSDIMRSV SIHNDADKPM IVELAVAAME ELVRMAQTGD PLWVPSDNAV EILSEEEYFR 300
TFPRGIGPKP IGLRSEASRE STVVIMNHIN LVEILMDVNQ WSS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229970 | 0.0 | AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20. |
| GenBank | AY091104 | 0.0 | AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. |
| GenBank | AY150491 | 0.0 | AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Takada S,Takada N,Yoshida A
Induction of epidermal cell fate in Arabidopsis shoots.
Plant Signal Behav, 2013. 8(11): p. e26236
[PMID:23989220] - Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
Plant Cell Physiol., 2015. 56(9): p. 1855-66
[PMID:26220906] - Katagiri Y, et al.
The coordination of ploidy and cell size differs between cell layers in leaves.
Development, 2016. 143(7): p. 1120-5
[PMID:26903507] - Seeliger I, et al.
The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
[PMID:27277595] - Schwarz EM,Roeder AH
Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
Front Plant Sci, 2016. 7: p. 1744
[PMID:27920789] - Meyer HM, et al.
Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
Elife, 2018.
[PMID:28145865]
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