PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3689_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 365aa    MW: 40320 Da    PI: 7.8156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3689_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06100124326
                 S---SGGGGTS.--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartG.tCkyGdrCkFaHg 26 
                  e C+ f+ +G  C++G+ C FaHg
  RrC3689_p1 100 GEVCPEFRNGGgDCSRGELCGFAHG 124
                 589*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.1997125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-497126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.86898126IPR000571Zinc finger, CCCH-type
SMARTSM003563134157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDVEHNNSGH IGRPTVDILP RKLLSSATSP SSPCLGDKAQ RECCHDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRQYHYTG EVCPEFRNGG GDCSRGELCG  120
FAHGVFECWL HPSRYRTEAC KDGKHCKRKI CFFAHSPRQL RVLPPSENFV SGGGGSSVLS  180
NKNNRCCMFC SHSPTSTLLD FSRSPTSSPP LSPADKSAVF SRLTRRHSAV AHKQALHELI  240
NSLDSFSLKE ALSAAASSSC PVTLPVTMLS NHHHRLPPWL DVGDIDLQLQ RSSLQYALSP  300
SSAPSHLNGQ LPPPSFFSDE FTPRGGRLSD FTVAASAAAE SRDKNSFEVG HSVDLDLGWV  360
NDLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455754.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-164C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3E6F30.0A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QGN20.0A0A3N6QGN2_BRACR; Uncharacterized protein
STRINGBo9g059770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-160C3H family protein