 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC3681_p3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
FAR1 |
| Protein Properties |
Length: 209aa MW: 23694.5 Da PI: 4.7602 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3681_p3 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 94.1 | 1.7e-29 | 109 | 196 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a+l ++ke++gkw++tk+ +eHnH+l+p
RrC3681_p3 109 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMLLIRKENSGKWVITKFAKEHNHPLMP 196
9******************************************999..999************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MCFCSPVVDF RIDNGDAVGM MMEIPVENHN EMGESSGQAM TLEQHDENHN EIGESSNQAM 60
TLEQDEKVDP DSIPLDVSDM AEEEEEEEVQ GDEPYVGQEF ESEAAAHGFY NAYATKVGFV 120
IRVSKLSRSR HDGSPIGRQL VCNKEGYRLP SKRDKVIRQR AETRVGCRAM LLIRKENSGK 180
WVITKFAKEH NHPLMPGRVR RGCIYDQYP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription activator involved in regulating light control of development. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL138659 | 1e-113 | AL138659.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T16L24. |
| GenBank | AL356014 | 1e-113 | AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23. |
| GenBank | AY058089 | 1e-113 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. |
| GenBank | AY143081 | 1e-113 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
| GenBank | CP002686 | 1e-113 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
