PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC36717_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 274aa    MW: 31327.1 Da    PI: 7.7579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC36717_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.3e-1135661546
                 HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                  R +++lKKA EL vLCd e++v+ +  +g+l
  RrC36717_p1 35 AREKTMLKKALELTVLCDNEICVLHYDREGNL 66
                 599***********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.6291473IPR002100Transcription factor, MADS-box
SMARTSM004320.00181472IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-112295IPR002100Transcription factor, MADS-box
PfamPF003195.5E-63666IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVSSSSPSDS STKMKKKKLS VRNQTSRFKK PFLLAREKTM LKKALELTVL CDNEICVLHY  60
DREGNLVNTL PEDQSQVTGI LDKYRNLSDG EKLKKSTNLS QFYNKKLVDE KKRSLTDAEE  120
RKRFTKKVGE FKGSLVDQFH ILQDRVRHLR YSQDHHHQTV QDQSPFLDVT PQENHNFPEA  180
SSYGFFPANA FSSSLIEEEN PLMMNFIPHD LDQQESFTNL LMSGDHVSTI TDQYLPSPAS  240
SSTVCSSNHH QSKFSVFLFN HETGTFTQLP NSAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487989.11e-179PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YBW81e-120A0A3P5YBW8_BRACM; Uncharacterized protein
STRINGBo6g015480.11e-120(Brassica oleracea)
STRINGBo6g015500.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.17e-31AGAMOUS-like 89