PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC366_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 917aa    MW: 101761 Da    PI: 5.3015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC366_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-184187148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEde+l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
        RrC366_p5 41 RGQWTAEEDEILTKAVHSFKGKNWKKIAEFFK-DRTDVQCLHRWQKVL 87
                     89*****************************9.************986 PP
2Myb_DNA-binding62.96.6e-2093139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde +v++++++G++ W+tIar ++ gR +kqc++rw+++l
        RrC366_p5  93 KGPWTKEEDEMIVQLIQKYGPKKWSTIARFLP-GRIGKQCRERWHNHL 139
                      79******************************.*************97 PP
3Myb_DNA-binding43.19.4e-14145187145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
        RrC366_p5 145 KEAWTQEEELVLIRAHQIYGNR-WAELTKFLP-GRSDNGIKNHWH 187
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6733687IPR017930Myb domain
SMARTSM007174.6E-154089IPR001005SANT/Myb domain
PfamPF002491.6E-154187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-224295IPR009057Homeodomain-like
SuperFamilySSF466892.51E-154297IPR009057Homeodomain-like
CDDcd001671.18E-134487No hitNo description
PROSITE profilePS5129432.29788143IPR017930Myb domain
SuperFamilySSF466891.1E-3190186IPR009057Homeodomain-like
SMARTSM007175.1E-1992141IPR001005SANT/Myb domain
PfamPF002491.0E-1793139IPR001005SANT/Myb domain
CDDcd001675.53E-1795139No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2796143IPR009057Homeodomain-like
PROSITE profilePS5129418.425144194IPR017930Myb domain
SMARTSM007172.4E-12144192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-19144194IPR009057Homeodomain-like
PfamPF002497.0E-12145188IPR001005SANT/Myb domain
CDDcd001676.84E-10147187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MESECTTTTS STPPPPQGIT HEGNPKSRQG RTSGPARRST RGQWTAEEDE ILTKAVHSFK  60
GKNWKKIAEF FKDRTDVQCL HRWQKVLNPE LVKGPWTKEE DEMIVQLIQK YGPKKWSTIA  120
RFLPGRIGKQ CRERWHNHLN PAINKEAWTQ EEELVLIRAH QIYGNRWAEL TKFLPGRSDN  180
GIKNHWHSAV KKKLDSYMSS GLLDQYQAMP LAPYDRSSAL QSAFMQSAMD GSGCVSGQAE  240
QDIENCQISS MAGCSMSARD YQNGIMNVNE GAAYRSDQYY YPELEDISVS ISEGSYEMED  300
CSQFSVSAST SQDYQFDFQE LSDISLEMSH DMSELPIPYT RERKESSLGA PNSISSVDVA  360
TYTNRGNVQT PETECCRVLF LDQESEGLSV SRSSTQEPNK EDYQDPVMCT SSTSEVTKSP  420
MKSSSSTSIA TPASGKETLR PAPLIITPEK YSKKTSGLMC HPFEAEPDRG ANENGSFICI  480
NDPSSSTCVG ERPNNTSEED ESYHLNDSKK LVPVNDFASL AEVKPHSLPK HETNMSSEQH  540
HEDVGASSSS LCFPSLDLPA FNDPLHDYSP LGIRKLLMSS MACISPLRLW ESPTGKKTLA  600
GAKSILRKRT RDLLTPLSEK RSDKKLETDI AASLAKDFSR LDVMFDESES RESISGTSAG  660
ANLGDKENHF QILNGGGEEN LRGEHTSLVS HRMPEETMDV SNSLVKQQQQ TCLEANVQRA  720
ESFSGVLSES NTNKQVLSPP GQSEAKAVKA QVSTPRNHLQ RSLMATCNKE QHSSASLCLV  780
VNSPSRARNT EGHLANNETN NENFSIFCGT PFRGGLESPS AWKSPFYVNS LLPSPRFDTD  840
ITIEDMGYIF SPGESIGMLT QRHEHTSGFA AFNAMDISLS PSTDDARKMK DLNKENNDPL  900
MAEGRVLDFN DCESPTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68411946159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68411946159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399657.10.0transcription factor MYB3R-4
SwissprotQ94FL90.0MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLV4KT420.0V4KT42_EUTSA; Uncharacterized protein
STRINGXP_006399657.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132131828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]