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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3642_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | SBP | ||||||||
Protein Properties | Length: 347aa MW: 37238.8 Da PI: 8.2952 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 24.1 | 9.4e-08 | 108 | 129 | 57 | 78 |
SS--S-STTTT-------S--- CS SBP 57 eekrsCrrrLakhnerrrkkqa 78 +krsCrrrLa+hnerrrk+q+ RrC3642_p3 108 GSKRSCRRRLAGHNERRRKPQP 129 68*****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.6E-5 | 65 | 114 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.331 | 70 | 127 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-10 | 71 | 131 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MNMGSNSGPG RGPGQAESGG SSTESSSLSG GLMFGQRIYF EDAGGGTGSS SSGGSNRRVR 60 GGGSGPSGQI PRCQVEGCGM DLTNAKGTEC VECTLKHPKS LSLVSNKGSK RSCRRRLAGH 120 NERRRKPQPA SLSVLSSRYG RIAPSLYGNA ETTMNGSFLG SQEMGWTNTR TLDTRVMRRP 180 SWQINPMNVF SQGSVSGGGG GGISFSSPEV MDTKPESYKG IGSDSNCALS LLSNPHQPHD 240 NTNDNNTWRT SSGFGPMTVT MAQPPPAPSQ HQYLNPPWVF KDDDNNCQND MSPVLNLGRF 300 TETEMGGGTT MGEFELSDHQ HQNRRQYMEG ENSRAYDSSS HHHNWSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433730.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 1e-161 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A3P6BG94 | 1e-180 | A0A3P6BG94_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g015800.1 | 1e-178 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-132 | squamosa promoter binding protein-like 9 |