PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC363_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 307aa    MW: 33120 Da    PI: 6.1632
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC363_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.29.1e-68812372154
     DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 
                rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s  +  +      ++ +kr+r++   +   + st+l+s ++
  RrC363_p4  81 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGGSgsgggGSSIPKRHRDT---TLPGTFSTHLPSDSA 177
                67899****************************************************9998887776777667777777765...66777889999**** PP

     DUF702  97 kkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                  e+e +s+P+e++s+a+frcv++s+vdd  ++ ++aYqt+v+igGh+fkGiLydqG+e+
  RrC363_p4 178 GLEMEEASFPPELNSDALFRCVKMSGVDDggDDGQYAYQTTVNIGGHLFKGILYDQGPES 237
                *****************************645668***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-6184236IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-2786128IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.107.4E-4115154No hitNo description
TIGRFAMsTIGR016242.5E-26186235IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MFSLGGNNNN GEEDNQQQEE KTNWVWYRSN TNTNNINPSS SLWQIPPEQQ LLMHHNQPQQ  60
QSLDLYPGHQ IDVSDLATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR GFDCSTHVRS  120
TWIPVARRRE RQQQLHMSTS GGSGGSGSGG GGSSIPKRHR DTTLPGTFST HLPSDSAGLE  180
MEEASFPPEL NSDALFRCVK MSGVDDGGDD GQYAYQTTVN IGGHLFKGIL YDQGPESSYV  240
SGGSGGSDHQ SSSAGVGNPF NTPAVADGGG GSSTMFLDPN SSGYYSSNMA TMFPPPGTQF  300
YQNPPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052640.0GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448425.11e-174PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-148SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-161V4ME11_EUTSA; Uncharacterized protein
STRINGXP_006412014.11e-162(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-126Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]