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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC363_p4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 307aa MW: 33120 Da PI: 6.1632 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC363_p4 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 219.2 | 9.1e-68 | 81 | 237 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + + ++ +kr+r++ + + st+l+s ++
RrC363_p4 81 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGGSgsgggGSSIPKRHRDT---TLPGTFSTHLPSDSA 177
67899****************************************************9998887776777667777777765...66777889999**** PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
e+e +s+P+e++s+a+frcv++s+vdd ++ ++aYqt+v+igGh+fkGiLydqG+e+
RrC363_p4 178 GLEMEEASFPPELNSDALFRCVKMSGVDDggDDGQYAYQTTVNIGGHLFKGILYDQGPES 237
*****************************645668***********************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MFSLGGNNNN GEEDNQQQEE KTNWVWYRSN TNTNNINPSS SLWQIPPEQQ LLMHHNQPQQ 60 QSLDLYPGHQ IDVSDLATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR GFDCSTHVRS 120 TWIPVARRRE RQQQLHMSTS GGSGGSGSGG GGSSIPKRHR DTTLPGTFST HLPSDSAGLE 180 MEEASFPPEL NSDALFRCVK MSGVDDGGDD GQYAYQTTVN IGGHLFKGIL YDQGPESSYV 240 SGGSGGSDHQ SSSAGVGNPF NTPAVADGGG GSSTMFLDPN SSGYYSSNMA TMFPPPGTQF 300 YQNPPRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205264 | 0.0 | GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-126 | Lateral root primordium (LRP) protein-related |