PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC361_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 340aa    MW: 38952.6 Da    PI: 4.536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC361_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.17.1e-23922202128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlskk 96 
                ppG rF Ptd   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r     g+Wk+t  ++++++k+
  RrC361_p5  92 PPGSRFLPTDLGCVRVHLRNKVDKKKSG---FITTLDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGTWKTTTVKEAIKDKN 187
                9************************955...5**************8.3333233445********999875367888977779**************** PP

        NAM  97 gelvglkktLvfykg.rapkgektdWvmheyrl 128
                +++ g  ++Lv+ k   + + + t W m+ey l
  RrC361_p5 188 EKVEGYIQSLVYNKTnVNGEIKPTGWNMKEYCL 220
                ************96524556678********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-2884233IPR003441NAC domain
PROSITE profilePS5100529.98591236IPR003441NAC domain
PfamPF023655.0E-1492220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTRDNDKPKV DDEPSSKSDD SLLGRGDKEG IGSDSLTRGS KYFEEGSSSS SHNHMNNLEE  60
HERLMMLGIN QGMHHLQHTD DPNCTKEAPV YPPGSRFLPT DLGCVRVHLR NKVDKKKSGF  120
ITTLDVYKDD PWLLDHVEND LFPRGEWYYF TPRNKRGASS CSRTVRGRGG GGTWKTTTVK  180
EAIKDKNEKV EGYIQSLVYN KTNVNGEIKP TGWNMKEYCL HEKNEDDLVL CHLKGNLEKK  240
GFVEEVKKDN ILPNHVQDHQ EEEEEEVGAN RVEMRTLQED DGDATQQQQQ QQQQEEGAVA  300
LGLPSHEGED IWFETNDLMD DENQQYQWDD DSDLYFDAEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-121NAC domain-containing protein 6-like
TrEMBLM4CK451e-122M4CK45_BRARP; Uncharacterized protein
STRINGBra004579.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-25NAC domain containing protein 6