PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC361_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 460aa    MW: 52787.6 Da    PI: 4.4986
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC361_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.11.2e-2161342128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlskk 96 
                ppG rF Pt+   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r     g+Wk+   ++++++k+
  RrC361_p1   6 PPGSRFLPTNLGCVRVHLRNKVDKKKSG---FITTLDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGTWKTISVKEAIKDKD 101
                9************************955...5**************8.3333233445********999875367888977779**************** PP

        NAM  97 gelvglkktLvfykg.rapkgektdWvmheyrl 128
                +++ g  ++Lv+ k   + +++ t W+m+ey l
  RrC361_p1 102 KKVEGYIQSLVYNKTnVNGETKPTGWTMKEYCL 134
                ************97625566778********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-263147IPR003441NAC domain
PROSITE profilePS5100529.4275150IPR003441NAC domain
PfamPF023653.3E-136134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
EAPVYPPGSR FLPTNLGCVR VHLRNKVDKK KSGFITTLDV YKDDPWLLDH VENDLFPRGE  60
WYYFTPRNKR GASSCSRTVR GRGGGGTWKT ISVKEAIKDK DKKVEGYIQS LVYNKTNVNG  120
ETKPTGWTMK EYCLHEKNED DLVLCHLKGD LKKKGFAEEV KKDNILSNQV QDHEEEAGAN  180
RVEMRTLQED HGDATQQQQH QQQQEQDAPV RRSLEGQGLG LETTMTTHNN LMTMVHEEDH  240
GDATQEQQQQ QEQGAAALGL PSHEGEDIWS ETNNLMTMQH DEDHGDDITE LEQQRLDQDY  300
PLPDMPHYEG QYSGFETMRQ MQNDFRTMLQ INHGDSSTQQ QQEQDAMALD ITPLHENHEL  360
GFETMTTTHN NLTTVQHEED HGDATQKQQQ QEQDAPVPAL HHTHEGQDLW FETMMPTLDE  420
DRQNDFDGSD FFIDVDEVIK DNANEAHLQQ PDVSQARDMQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-125NAC domain-containing protein 6-like
TrEMBLA0A397Z9R51e-130A0A397Z9R5_BRACM; Uncharacterized protein
TrEMBLM4CK411e-130M4CK41_BRARP; Uncharacterized protein
STRINGBra004575.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.15e-26NAC domain containing protein 6