![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC36153_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 100aa MW: 11583 Da PI: 9.4381 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.4 | 2.2e-11 | 63 | 84 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++ +pr RrC36153_p1 63 LDDGYRWRKYGQKSVKNNGHPR 84 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-12 | 50 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-10 | 55 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.714 | 58 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-4 | 63 | 100 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-8 | 64 | 85 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 100 aa Download sequence Send to blast |
MMPPLALPGE VEPSSSSWCP TSFHVPTQPP ENDQIGDQGK KKDKRSRKVP RIEFHTRSDD 60 DVLDDGYRWR KYGQKSVKNN GHPRYVPNTS ISLNLYMFMY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF430042 | 1e-119 | KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635201.1 | 5e-56 | PREDICTED: probable WRKY transcription factor 24 | ||||
Refseq | XP_013743457.1 | 5e-56 | probable WRKY transcription factor 24 | ||||
Refseq | XP_013746877.1 | 5e-56 | probable WRKY transcription factor 24 | ||||
Refseq | XP_018484294.1 | 5e-56 | PREDICTED: probable WRKY transcription factor 24 | ||||
Swissprot | Q9FFS3 | 2e-37 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A078I3P2 | 1e-54 | A0A078I3P2_BRANA; BnaCnng11190D protein | ||||
TrEMBL | A0A0D3C0H4 | 1e-54 | A0A0D3C0H4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C9J5 | 1e-54 | A0A3P6C9J5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g142200.1 | 2e-55 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41570.1 | 3e-31 | WRKY DNA-binding protein 24 |