PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3591_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 211aa    MW: 24352.3 Da    PI: 6.5088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3591_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-152972145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +g+WT+eEd+ l+++v   G g+W+t+a+  g++R++k+c+++w+
       RrC3591_p2 29 KGPWTPEEDK-LLEYVSSNGEGRWSTVAKSAGLNRSGKSCRLKWR 72
                     79*****997.569******************************8 PP
2Myb_DNA-binding48.91.5e-1572114145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+
       RrC3591_p2  72 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWR 114
                      7888******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-162275IPR009057Homeodomain-like
PROSITE profilePS5129420.3632479IPR017930Myb domain
SuperFamilySSF466891.65E-2526113IPR009057Homeodomain-like
SMARTSM007174.3E-92877IPR001005SANT/Myb domain
PfamPF002491.4E-132972IPR001005SANT/Myb domain
CDDcd001672.38E-93172No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1876117IPR009057Homeodomain-like
CDDcd001672.06E-976116No hitNo description
PfamPF139218.4E-776119No hitNo description
SMARTSM007175.0E-678119IPR001005SANT/Myb domain
PROSITE profilePS5129410.31680121IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLDWGVDQVH HPNHDHDPCK QQQQQGCRKG PWTPEEDKLL EYVSSNGEGR WSTVAKSAGL  60
NRSGKSCRLK WRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK NYWRAHYKKM  120
EISFSNQEKL VSQDNELNIA TSFSYPTSVY NDQFHMPQNV AATSIDHSMI DEEYDDPHVL  180
VVVQNREQLL ILLGSLTAAE MRLRRVDHGI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19291197106B-MYB
1h88_C6e-19311928157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-19311928157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719806e-56AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195936e-56AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696010.11e-100myb-related protein 305
TrEMBLA0A3P6E1542e-98A0A3P6E154_BRAOL; Uncharacterized protein
STRINGBo9g009020.14e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.13e-82myb domain protein 121