PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3523_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 304aa    MW: 34641.8 Da    PI: 9.08
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3523_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C+ksF +   L  H+r+H
  RrC3523_p3  4 YKCRFCSKSFINERALGGHMRSH 26
                9*********************9 PP
2zf-C2H215.45.5e-05189211123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk+F++   L  H  +H
  RrC3523_p3 189 FTCETCGKVFKSYQALGGHRASH 211
                 89***********9999998887 PP
3zf-C2H211.80.00072240262123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F++   L  H r+H
  RrC3523_p3 240 HECPICLRVFTSGQALGGHKRSH 262
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-10326No hitNo description
PROSITE profilePS5015710.803426IPR007087Zinc finger, C2H2
PfamPF139122.2E-5427IPR007087Zinc finger, C2H2
SMARTSM003550.0011426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-10184211No hitNo description
PfamPF139124.9E-11189213IPR007087Zinc finger, C2H2
SMARTSM003550.02189211IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PfamPF139121.9E-12239262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203240262IPR007087Zinc finger, C2H2
SMARTSM003550.14240262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESYKCRFCS KSFINERALG GHMRSHMPTL HNFCIDEEAR PSQLSDDTES DVSSSSSSSE  60
EVEGKRNGFR EEKHPTIDDD QKFAFTGSQK NIVNLTRKRS KRTRKLDSFT VKKVKTSQLG  120
YKTEPEPPHS SDSDTTTDED LAFCLMMLSR DKWKKKKKNN KTSSHKEVVE EMDNNSSKMN  180
RATTKKERFT CETCGKVFKS YQALGGHRAS HKKNRVSNKT EQPSETEYDN MVVVAEKRVH  240
ECPICLRVFT SGQALGGHKR SHGLGNLSVN HHHQVHGTES VKQRMIDLNL PAPREEDEVS  300
VVFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691276.10.0zinc finger protein ZAT9-like
RefseqXP_022556051.10.0zinc finger protein ZAT9-like
SwissprotQ9M2021e-137ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A3P6C5701e-179A0A3P6C570_BRAOL; Uncharacterized protein
STRINGBo4g104940.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-104C2H2-like zinc finger protein