PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC351_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 852aa MW: 90558.9 Da PI: 5.4189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC351_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	151	191	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq RrC351_p2 151 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191 668889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-10	146	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-6	149	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.15E-4	149	195	No hit	No description
Pfam	PF03600	2.8E-29	429	783	IPR004680	Citrate transporter-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MGDTVGDQAM VETPGAPSFS ELLMLSDGFL SSSEGHQREA NGGDGGEDSF SFVFSGTNGS 60 KMLCFSGDCQ NGDESLFQEP SLPSGVSLSD PSSCTVDICK KSSDTCTEEK STKPTNKKRT 120 GSGNGQNMDH NRKPSKKCQK NQDKSSVGIA KVRKERLGER IAALQQLVSP YGKTDAASVL 180 HEAMGYIKFL QDQIQVLCSP YLINYSLDGG AVTGDITPGK KVRDLRSRGL CLVPVSSTVN 240 VENSNGADLW SPATANSSPT FKSLSLSLFP RCSPMAVLPI GSHFAPPHKL TKRYTSSPPI 300 TLSTRLPQNV SVSKLSGTTT NSRLSRHSVL ARAEDKIRVS SPPPLEEPSQ PLDDSDLEDL 360 LEGSCDPICS VDEPSSSYFE ANYQPKTDIV KAVAILAAAL TGTAAINHSW VAANQDVAMA 420 LLFGIGYAGI IFEESLAFNK SGVGLLMAVS LWVVRGIGAP STEIAVAELQ HATAEVSEIV 480 FFILGAMTIV EIVDAHQGFK LVTDNITTRK PKTLLWVVGF VTFFLSSILD NLTSTIVMVS 540 LLRKLVPQSE YRKLLGAVVV IAANAGGAWS PIGDVTTTML WIHGQITTLP TIQGLFIPSA 600 ISLAVPLALM SLSSEVNEKG QDSSDVLASE KMAPRGKLVF GVGLGALVFV PVFKALTGLP 660 PYMGILLGLG VLWVLTDAIH YGESERQKLK VPQALSRIDT QGALFFLGIL LSVSSLESAG 720 ILREIANYLD ANIPNIELIA SAIGVVSAII DNVPLVAATM GMYDLTSFPQ DSEFWQLVAF 780 CAGTGGSMLI IGSAAGVAFM GMEKIDFFWY FRKVSGFAFA GYAAGIAAYL ALQSVHFSIP 840 TTVAQIPFLT GS

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MGDTVGDQAM VETPGAPSFS ELLMLSDGFL SSSEGHQREA NGGDGGEDSF SFVFSGTNGS  60
KMLCFSGDCQ NGDESLFQEP SLPSGVSLSD PSSCTVDICK KSSDTCTEEK STKPTNKKRT  120
GSGNGQNMDH NRKPSKKCQK NQDKSSVGIA KVRKERLGER IAALQQLVSP YGKTDAASVL  180
HEAMGYIKFL QDQIQVLCSP YLINYSLDGG AVTGDITPGK KVRDLRSRGL CLVPVSSTVN  240
VENSNGADLW SPATANSSPT FKSLSLSLFP RCSPMAVLPI GSHFAPPHKL TKRYTSSPPI  300
TLSTRLPQNV SVSKLSGTTT NSRLSRHSVL ARAEDKIRVS SPPPLEEPSQ PLDDSDLEDL  360
LEGSCDPICS VDEPSSSYFE ANYQPKTDIV KAVAILAAAL TGTAAINHSW VAANQDVAMA  420
LLFGIGYAGI IFEESLAFNK SGVGLLMAVS LWVVRGIGAP STEIAVAELQ HATAEVSEIV  480
FFILGAMTIV EIVDAHQGFK LVTDNITTRK PKTLLWVVGF VTFFLSSILD NLTSTIVMVS  540
LLRKLVPQSE YRKLLGAVVV IAANAGGAWS PIGDVTTTML WIHGQITTLP TIQGLFIPSA  600
ISLAVPLALM SLSSEVNEKG QDSSDVLASE KMAPRGKLVF GVGLGALVFV PVFKALTGLP  660
PYMGILLGLG VLWVLTDAIH YGESERQKLK VPQALSRIDT QGALFFLGIL LSVSSLESAG  720
ILREIANYLD ANIPNIELIA SAIGVVSAII DNVPLVAATM GMYDLTSFPQ DSEFWQLVAF  780
CAGTGGSMLI IGSAAGVAFM GMEKIDFFWY FRKVSGFAFA GYAAGIAAYL ALQSVHFSIP  840
TTVAQIPFLT GS

Functional Description ? help Back to Top
Source	Description
UniProt	Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. {ECO:0000269\|PubMed:24617758}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084922	0.0	AY084922.1 Arabidopsis thaliana clone 121587 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492202.1	0.0	PREDICTED: uncharacterized protein LOC108862539
Swissprot	Q9LT68	0.0	NHD1_ARATH; Sodium/proton antiporter 1
TrEMBL	A0A397ZCI4	0.0	A0A397ZCI4_BRACM; Uncharacterized protein
STRING	Bra022427.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-128	bHLH family protein

Publications ? help Back to Top
Mäser P, et al. Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol., 2001. 126(4): p. 1646-67 [PMID:11500563] Cellier F, et al. Characterization of AtCHX17, a member of the cation/H+ exchangers, CHX family, from Arabidopsis thaliana suggests a role in K+ homeostasis. Plant J., 2004. 39(6): p. 834-46 [PMID:15341627] Furumoto T, et al. A plastidial sodium-dependent pyruvate transporter. Nature, 2011. 476(7361): p. 472-5 [PMID:21866161] Müller M, et al. Decreased capacity for sodium export out of Arabidopsis chloroplasts impairs salt tolerance, photosynthesis and plant performance. Plant J., 2014. 78(4): p. 646-58 [PMID:24617758] Kunz HH, et al. Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(20): p. 7480-5 [PMID:24794527]