PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3512_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 278aa MW: 31087.2 Da PI: 9.0712

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3512_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.1e-11	50	107	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se RrC3512_p2 50 KRAKRIIANRQSAARSKERKARYIMELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 107 9*****************************************9999887776666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-17	46	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	48	111	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-9	50	108	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.6E-11	50	105	No hit	No description
SuperFamily	SSF57959	1.05E-10	50	101	No hit	No description
CDD	cd14703	3.48E-20	51	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
GGGEEGGSSS RTRHRHSLSV DGGSSSLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ 60 SAARSKERKA RYIMELERKV QTLQTEATTL SAQLSLFQRD TTGLSSENTE LKLRLQVMEQ 120 QAKLRDALND QLKKEVERLK FATGEASHTD AYNLGMAHMQ YAQHQPQQQS FFQQQHHHHQ 180 QQTDAQNLQQ MTHQFHLFQP NNNNNNNNQN PNVTSSTTRQ NPQLMHQAGS NPSAQSHSFA 240 EAMHEDPLGR LQGLDISSCG RGSSFGRSDT VSESSSTM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	0.0	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	0.0	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	0.0	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441811.1	1e-157	PREDICTED: transcription factor RF2b
Refseq	XP_018441812.1	1e-157	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-150	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M4CK48	1e-147	M4CK48_BRARP; Uncharacterized protein
STRING	AT2G40620.1	1e-148	(Arabidopsis thaliana)
STRING	Bra004582.1-P	1e-148	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-126	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]