PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3462_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 667aa    MW: 71690.1 Da    PI: 6.1099
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3462_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32255312260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  RrC3462_p2 255 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCPVKKKVERSR-EGHITEIIYKGAHNHSK 312
                 8****************************************.***************85 PP
2WRKY103.98.8e-33470528159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  RrC3462_p2 470 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 528
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.83E-25252313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-28252313IPR003657WRKY domain
SMARTSM007742.7E-35254312IPR003657WRKY domain
PfamPF031061.5E-24255310IPR003657WRKY domain
PROSITE profilePS5081123.491255313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37455530IPR003657WRKY domain
SuperFamilySSF1182901.57E-28462530IPR003657WRKY domain
PROSITE profilePS5081138.136465530IPR003657WRKY domain
SMARTSM007741.8E-37470529IPR003657WRKY domain
PfamPF031068.5E-25471528IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSGFDENVAI MGEWVPCNPT PGTLFSSAIG EEKNSKRVLE RELSLNHGQV TGLQEDTNGN  60
DENNNDSPTQ NNVSRGGGLR ERIAARAGFN TPKLNTENIR SNAGFSMDSN LRSPCLTISS  120
PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVSSNGL FSDKAKDEFF DNIGASFTFQ  180
PVSRSSSSFF QGAATEMVPV DYGNYNPEDV TKSIGYTGQK RKTSESQEEE EEGEGEEEQR  240
RGGGGDSMVG GAPAEDGYNW RKYGQKLVKG SEYPRSYYKC TNPNCPVKKK VERSREGHIT  300
EIIYKGAHNH SKPPPNRRSG MQVDGTDQAE QQQQRDSAPT WVSCNNNQQV GSNEKNNVQE  360
GFDYGNQSGS VQGQTGGGGQ FESGDGNGGV VVVDASSTFS NEEDEDDRGT HGSASLGYDG  420
GGGGGGGGEG DESESKRRKL EAYAAEMSGA TRAIREPRVV VQTTSDVDIL DDGYRWRKYG  480
QKVVKGNPNP RSYYKCTAPG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHGSG  540
GGNGNNNGGS SAAQAHHYQE QPRGRYERQL TASSQSPFGR PFSFQPHLGP PSGFSFGLGQ  600
TGLANLSLPG LAFGQGKLPG LPHHPYMSQP GGMSEAMMHR GMEPKVEPVS ETGQSVYNQI  660
MSRLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37255531878Probable WRKY transcription factor 4
2lex_A6e-37255531878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121660.0FJ012166.1 Brassica napus WRKY2 transcription factor (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456972.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078IK000.0A0A078IK00_BRANA; BnaC09g53550D protein
STRINGBo9g123740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]