PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC345_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 250aa    MW: 28864.2 Da    PI: 10.0466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC345_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-111970147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-......HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt......lkqcksrwqky 47
                     rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR+      +k+c++rw++ 
        RrC345_p8 19 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLH-GRSvtygfiGKSCRLRWYNQ 70
                     899*****************************.7764444448********96 PP
2Myb_DNA-binding551.9e-1777120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
        RrC345_p8  77 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 120
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9871471IPR017930Myb domain
SuperFamilySSF466891.22E-2517118IPR009057Homeodomain-like
SMARTSM007171.7E-91873IPR001005SANT/Myb domain
PfamPF002496.9E-111971IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232078IPR009057Homeodomain-like
CDDcd001676.78E-102269No hitNo description
PROSITE profilePS5129423.19872126IPR017930Myb domain
SMARTSM007171.5E-1476124IPR001005SANT/Myb domain
PfamPF002491.1E-1477119IPR001005SANT/Myb domain
CDDcd001671.41E-1079119No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2079124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDMSRGSNSF DNKKASCHRG HWRPIEDDHL RQLVEQYGPK NWNFIAQHLH GRSVTYGFIG  60
KSCRLRWYNQ LDPNITKKPF TEEEEERLLK AHRIQGNRWA SIARLFPGRT DNAVKNHFHV  120
IMARRKRESL SSTSTSTFNQ SWHNMLSPSS SLARLNRSQF GLWRYQKDKS RGLWPCTFVS  180
APRDDEFGSS SISNVHKEVY SEKRKLKELV DQHNNALDTA TPKNSVEDGP STGDDGEKKN  240
VAFIDFLGVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-32191254104MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-32191254104C-Myb DNA-Binding Domain
1msf_C8e-32191254104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896370.0AC189637.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735180.11e-153transcriptional activator Myb-like
TrEMBLA0A0D3A2881e-152A0A0D3A288_BRAOL; Uncharacterized protein
STRINGBo1g008140.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-148myb domain protein 69