PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3448_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 430aa    MW: 48075.1 Da    PI: 6.7818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3448_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-2183177499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + ++ ++l ++ l+lp +f+ ++g k  + ++++l de+ rsW + l+++k+s+++++t+GW++F+++ng k+g  + Fkl+ r+e++++++v+ +
  RrC3448_p1  83 ASVTVSNLHEDSLCLPPDFTISNGFKR-KCRKIVLADERERSWALDLRFNKSSDTFYITRGWRNFCEENGKKAGSLFKFKLIMRNEETPLLSVCPT 177
                 556788999999***********8775.567***************************************************999999***99975 PP
2B354.71.8e-17206300199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g +   +l  r +sgr+ l+kG k+F++angL+ gD+++++l++ +++++v++++++
  RrC3448_p1 206 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRRLANL-LRESSGRMSLGKGLKDFARANGLNMGDSFTLELIW-ENATPVLSLLST 300
                 7788899********************99766..8********9999999.69999******************************.888899988765 PP
3B364.61.5e-20308402199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL+ g++++++ ++ +++++++++ ++
  RrC3448_p1 308 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIW-EDATPMLSLSSR 402
                 7778899********************99665..8***************.6888888*************************999.888899888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1973176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1975177IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-1880168No hitNo description
PROSITE profilePS5086314.21280178IPR003340B3 DNA binding domain
SMARTSM010193.3E-2481178IPR003340B3 DNA binding domain
PfamPF023624.3E-1982176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18196296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-18202298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-16205299No hitNo description
SMARTSM010191.2E-26206301IPR003340B3 DNA binding domain
PfamPF023629.0E-17206299IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041206301IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-21301406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-21304404IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-18307399No hitNo description
PROSITE profilePS5086315.34308403IPR003340B3 DNA binding domain
SMARTSM010192.0E-29308403IPR003340B3 DNA binding domain
PfamPF023624.2E-20308402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MFSKHQQGTG LEKKILAPTQ MMLSGLGPNN EDQDKMGYIL RKKHPITEEV DDDQDNTGNK  60
KVKTNSPNTE ADSSSSDNSC FVASVTVSNL HEDSLCLPPD FTISNGFKRK CRKIVLADER  120
ERSWALDLRF NKSSDTFYIT RGWRNFCEEN GKKAGSLFKF KLIMRNEETP LLSVCPTESI  180
SSDGTQGDEN NPQRCRDSTS PNQNRFVTLT LTNDSLKSSR LYLPLPFLKE NGMDKPGMVT  240
LLGKDGTRRL ANLLRESSGR MSLGKGLKDF ARANGLNMGD SFTLELIWEN ATPVLSLLST  300
EFRSQNRFVT LTLTQDSFKN SRLGLPLPFM RENGMNEPGT IALLGKDGTK WMTNLLRESQ  360
GRMSLGKGWK DFARANGLEI GESFTLESIW EDATPMLSLS SRESKSEKVS VSTEPSIGNE  420
TKKDENNIED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475790.10.0PREDICTED: B3 domain-containing protein REM12
SwissprotP0CAP41e-122REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A3P6APF30.0A0A3P6APF3_BRAOL; Uncharacterized protein
STRINGBra000545.1-P0.0(Brassica rapa)
STRINGBo3g041930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-123B3 family protein