PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC342_p9
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28612.2 Da    PI: 4.6149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC342_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.81.4e-1690144357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                k++++t+ ql+ Lee Fe+++ +  +++  LA+ +gL+ +qV +WFqNrRa+ k+
  RrC342_p9  90 KKRKLTPIQLRLLEESFEEDKRLEPDRKLWLAETMGLQPSQVAIWFQNRRARFKN 144
                66799***********************************************995 PP
2HD-ZIP_I/II109.91.8e-3590180292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkr+l+  q++lLEesFee+++Lep+rK  la+++glqp qva+WFqnrRAR+k++qlE d+++Lk++y +lk++++ L +++++L ++++
    RrC342_p9  90 KKRKLTPIQLRLLEESFEEDKRLEPDRKLWLAETMGLQPSQVAIWFQNRRARFKNRQLEIDCDSLKASYAKLKTDRDILFRQNQALINKVA 180
                  9*************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1877147IPR009057Homeodomain-like
PROSITE profilePS5007115.98585145IPR001356Homeobox domain
SMARTSM003891.6E-1688149IPR001356Homeobox domain
CDDcd000869.27E-1690146No hitNo description
PfamPF000465.3E-1490143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1791149IPR009057Homeodomain-like
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PfamPF021831.1E-12146186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENSNTDSEV FSWFQNQNQS HCLKLPSSCF PPTSLSAFYG IHLLHCSIFF FLVIAILDSL  60
VGSSSMSNTE TNTVDEDDVC ESYKTCETSK KRKLTPIQLR LLEESFEEDK RLEPDRKLWL  120
AETMGLQPSQ VAIWFQNRRA RFKNRQLEID CDSLKASYAK LKTDRDILFR QNQALINKVA  180
LLKEELKIQE KLETQSIETE KLGEEGSSVR SDNTQYSEEE GLGNNQYSFP ELAALGFYYD  240
PTLCASNLGL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485209.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-126ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A397XYR61e-139A0A397XYR6_BRACM; Uncharacterized protein
STRINGBo5g041500.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-120HD-ZIP family protein