PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3401_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 408aa    MW: 44117.9 Da    PI: 4.6292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3401_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06352374426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+ff     C+ G++C F H+
  RrC3401_p1 352 RPCMFFNTPRGCRNGASCLFQHD 374
                 89********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.07348376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5353379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
VRLFTSEDSP SQVGSESQDH FQAKSWEASH PSDEDNLPPG FGGLFSPNES LINLSDIPII  60
KWQCSVRILL DEEWSVVAGD ESKEVEAQNQ RELRVLEAFY PAASSIPPNP SVAADVNNSD  120
CDDQQTVVIP ILVVEDDDVV MDTASILPTL SGVDVGTVQS VRDENTSTSS TLPPATSEIM  180
AALAALSNIK EEGSSSMIDP DLLMKFLSNT KMVESLVANC GSAGSVSSSS ATHEANGVVT  240
TTAPSCSNGQ YNPQPAVSHI PPPMVYPPTP APSDQSNYGA PPPPAARDAS YYKSLIQKHG  300
GERQEALPAQ QHLGGYRHSL QPGRGGPNPE MVNSINNNNN QRPRDSKPKI MRPCMFFNTP  360
RGCRNGASCL FQHDAATTTA YQPRNINNRN INNNPEMQFA KRMRFDRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439101.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A3P6FC280.0A0A3P6FC28_BRAOL; Uncharacterized protein
STRINGBo5g027940.10.0(Brassica oleracea)
STRINGXP_006416457.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]