PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC338_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24278.5 Da PI: 6.674 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 4.1e-08 | 44 | 93 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ ++ Lr++lP ++K a+ + A ++Ik+ RrC338_p1 44 KLLHRDIERQRRQEMAILYASLRSHLPLqY---LKGKRAVADHVNAAADFIKD 93 6679************************66...9999999**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 39 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.19E-6 | 40 | 93 | No hit | No description |
PROSITE profile | PS50888 | 10.823 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-6 | 44 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDPNKNPYSK GYQRQRPFGS AGEGGSSGCS DMPHDIDDNN KKKKLLHRDI ERQRRQEMAI 60 LYASLRSHLP LQYLKGKRAV ADHVNAAADF IKDTETRIKE LSARRDELSR ETCQRLDPGL 120 AGTGSELGKP EPASLIVQPC VNGFEVAVSS NSSGPDALPL SRVLEALQEL GLEVINSLTT 180 RVNERLMHTI QVEVNTFGCL DLAWLQQKLV EELIPSPGY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189309 | 5e-84 | AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450176.1 | 1e-148 | PREDICTED: transcription factor bHLH126-like | ||||
Swissprot | Q9STJ6 | 1e-103 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A078JFG0 | 1e-127 | A0A078JFG0_BRANA; BnaCnng43800D protein | ||||
TrEMBL | A0A397YBN9 | 1e-128 | A0A397YBN9_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQY7 | 1e-127 | A0A3P6FQY7_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4D1W7 | 1e-128 | M4D1W7_BRARP; Uncharacterized protein | ||||
STRING | Bra010467.1-P | 1e-128 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-100 | bHLH family protein |