PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3377_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30301.5 Da    PI: 4.3326
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3377_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.32.2e-091656444
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                e k +r+v  skRr++++ K  EL+ L + ++avi  s+ +
  RrC3377_p2 16 ETKEQRSVACSKRRKTLFSKSAELCRLFGSNIAVIATSPGD 56
                77899******************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-11564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.446565IPR002100Transcription factor, MADS-box
CDDcd002661.32E-18673No hitNo description
SuperFamilySSF554558.24E-14791IPR002100Transcription factor, MADS-box
PfamPF003195.3E-101657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVRGGTKRKI EIKKRETKEQ RSVACSKRRK TLFSKSAELC RLFGSNIAVI ATSPGDKTSV  60
ASSFSGHASA SEIVDCYLSG TLPPKISVPD ESELGFWWTD PNLYSSCDDL SQLDVIEDLI  120
KRTKKDLMDC LGKQEDSRVS CFDRGESLTQ HASDSHRNPS SSSQAVTMYP NISDPLDGSS  180
QVIYGGELSS GQSRYLVNKD SGSCICETEK ENNLIRSVPQ ETEQTQSIVN VDGVDEDQSF  240
WDELLYYEDV FGLNNGEDDV MIDIGEFLND IESG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11229KKRETKEQRSVACSKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438220.10.0PREDICTED: uncharacterized protein LOC108810612
TrEMBLA0A078GI721e-154A0A078GI72_BRANA; BnaC02g39620D protein
TrEMBLA0A398AGB11e-154A0A398AGB1_BRACM; Uncharacterized protein
STRINGBra020600.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.14e-67M-type_MADS family protein