PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC33624_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 182aa MW: 20661.6 Da PI: 10.0142 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.9 | 5.7e-29 | 52 | 106 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++Y eC+kNhA+s+Ggh+vDGC+Efmp geegt +al CaAC CHR+FHR ev+ RrC33624_p1 52 ETKYMECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLSALSCAACSCHRSFHRNEVS 106 689*************************9.999*******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.8E-27 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.5E-26 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-21 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.134 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 152 | 180 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEHGRKCNAI TSTTEPHTNP DPEGAKPGSD LSLLPFLVKK ENQKPRTRGD HETKYMECQK 60 NHAVSTGGHV VDGCCEFMPG GEEGTLSALS CAACSCHRSF HRNEVSRRRN STQEELISPA 120 FYRSGSLYKA MIQPRGVYQK QRVNENGLMI IRKKKRVRTK INEEQKEKMK GFAERLGWRI 180 LK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433718.1 | 1e-125 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q9SVL0 | 4e-67 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A397XZJ4 | 4e-88 | A0A397XZJ4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F6Z2 | 4e-88 | M4F6Z2_BRARP; Uncharacterized protein | ||||
STRING | Bra036852.1-P | 7e-89 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13854 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 2e-66 | homeobox protein 28 |