PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3322_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 344aa MW: 38687.6 Da PI: 9.3258 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.9 | 2e-28 | 193 | 252 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ ++++ pr+Y++C+ a +C+vkkkv+rs ed++v++ tYegeHnh+ RrC3322_p1 193 VKDGFQWRKYGQKVTRDNPSPRAYFKCACApSCTVKKKVQRSVEDQSVLVATYEGEHNHP 252 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-27 | 188 | 254 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.395 | 188 | 254 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-24 | 189 | 254 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-31 | 193 | 253 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-23 | 194 | 252 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
QIPEEKKEVN KIELLKNKIK IRSNSYYKSL NVLSKLTSRI KIQEDSSYTS MDQYPSSLVD 60 TSLDLTIGVT RMRVEEESTT TALVDELNRM NAENKKLSEM LTLMCDKYNV LRKQLMEYVN 120 KTERDQVSPP KKRKSPTRDD TNSSAVVGGV SESSSTDQDD QYLCKKQREE TVAKEKVSRV 180 YYKTEASDTT LVVKDGFQWR KYGQKVTRDN PSPRAYFKCA CAPSCTVKKK VQRSVEDQSV 240 LVATYEGEHN HPMPSHIDSN SGLNRSLGGP AAAANRSRSL AEPVTSIDLT ESKNVRSPSR 300 IDFPEVQKLL VEQMASSLTK DPNFTAALAA AVTGRLHQQN QTDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-20 | 192 | 255 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-20 | 192 | 255 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430054 | 0.0 | KF430054.1 Brassica rapa WRKY transcription factor 40 (WRKY40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472247.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 0.0 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | M4CW38 | 0.0 | M4CW38_BRARP; Uncharacterized protein | ||||
TrEMBL | V5REM3 | 0.0 | V5REM3_BRACM; WRKY transcription factor 40 | ||||
STRING | Bra008435.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-173 | WRKY DNA-binding protein 40 |