PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3321_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 408aa    MW: 45222.8 Da    PI: 6.6089
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3321_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17125174155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  RrC3321_p2 125 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 174
                 78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15125182IPR016177DNA-binding domain
PfamPF008474.4E-9125174IPR001471AP2/ERF domain
SMARTSM003807.9E-33126188IPR001471AP2/ERF domain
PROSITE profilePS5103217.82126182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-17126182IPR001471AP2/ERF domain
CDDcd000183.59E-11126181No hitNo description
SMARTSM003806.7E-5218266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLDLNLDAES TQYGDSIADR QTSDVSCNRV DESGTSKSSV INADADEDSS ISTRDFTLSF  60
DILKVGGGGD ERTASISGVT KELFPVAGHL RSSSSRSWID LSFDTKSVAP APARKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN  180
FTVGDYEEDM KQVENLSKEE FVHILRRQST GFSRGTSKYR GVTLHKCGRW EARVGQLLAK  240
KDDDKAAISS NGREAVPNFE LTSYPNEINF ESGHDKLDLN LGISLSPGYV PKQNGRISYF  300
PSNPYVTQTG VSLTIDTEFM GKPVNTPLPY GSSDHRAYFE ENRSEAEGGM MSNWGWHRLD  360
QTSTMRPQQP PQLFSVAAAS SGFSNFRQQP PSESASHECY ALYLGGNW
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473461.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
RefseqXP_018473470.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A397ZXR50.0A0A397ZXR5_BRACM; Uncharacterized protein
STRINGBo3g040110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-178related to AP2.7