PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3301_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 204aa    MW: 23306.3 Da    PI: 9.6842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3301_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l  +++ +G g+W  I+r  g++R +k+c++rw +yl
       RrC3301_p4 17 RGLWKPEEDMILRSYIETHGEGNWGDISRNSGLKRGGKSCRLRWKNYL 64
                     788*****************************99************97 PP
2Myb_DNA-binding48.61.9e-1570115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
       RrC3301_p4  70 RGGMSSQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 115
                      677899****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9071264IPR017930Myb domain
SMARTSM007173.1E-131666IPR001005SANT/Myb domain
SuperFamilySSF466893.91E-2816111IPR009057Homeodomain-like
PfamPF002496.8E-131764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-211871IPR009057Homeodomain-like
CDDcd001671.01E-92064No hitNo description
PROSITE profilePS5129423.40665119IPR017930Myb domain
SMARTSM007171.4E-1469117IPR001005SANT/Myb domain
PfamPF002491.1E-1370115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2272118IPR009057Homeodomain-like
CDDcd001672.67E-1073115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEKKRGEEER KSHVVKRGLW KPEEDMILRS YIETHGEGNW GDISRNSGLK RGGKSCRLRW  60
KNYLRPNIKR GGMSSQEQDL IIRMHKLLGN RWSLIAGRLP GRTDNEVKNY WNTHLNKKTN  120
GRKQNATESV EATTPWVDKP VMSAEARGIH GGGEGEEGTT TTTWMEETNF FARIESPLPL  180
ASHYPSDTLS FDPSFAFTDC FPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231511925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468290.11e-149PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF71e-107MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078JF761e-117A0A078JF76_BRANA; BnaC02g44890D protein
STRINGBra022602.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-101myb domain protein 82