PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 291aa MW: 30887.9 Da PI: 6.3142

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC32_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.3e-09	12	56	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ ++d + +a + + + W++Ia+ ++ g++ +q+k+++ RrC32_p6 12 AWSRDDDIAFERALASYTDEseeKWEKIAADVP-GKSVEQIKEHYE 56 8***************99*********.********95 PP
2	Myb_DNA-binding	42	2.1e-13	118	162	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky RrC32_p6 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.487	8	63	IPR017884	SANT domain
SMART	SM00717	4.2E-8	9	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-4	12	57	IPR009057	Homeodomain-like
CDD	cd00167	2.81E-8	12	59	No hit	No description
Pfam	PF00249	1.6E-7	12	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.61E-10	13	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.581	110	167	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-16	113	168	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-10	115	165	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.5E-17	115	165	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.4E-10	118	161	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-11	118	162	IPR001005	SANT/Myb domain
CDD	cd00167	8.06E-10	118	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTVEEVSDGS SAWSRDDDIA FERALASYTD ESEEKWEKIA ADVPGKSVEQ IKEHYELLVE 60 DVSNIESGCV PLPSYGSPQG DVDDGGSTKK GGGGNSHAGE SNHGSKAKAD QERRKGIAWT 120 EDEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KERRRTSIHD 180 ITSVGDADVS TPQGPITGQN NNNNNNNNNG SASAAAGVAG VAGGGGNKPA KQAASQPPPT 240 YGTPSIGQPV VGTPVNLPAP PHMAFAAPVP GAPVNMSQMP YTMPRTPTAH R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	13	82	11	80	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471191.1	1e-173	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	1e-158	SRM1_ARATH; Transcription factor SRM1
TrEMBL	E4MWT4	1e-162	E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBL	V4LAV4	1e-162	V4LAV4_EUTSA; Uncharacterized protein
STRING	XP_006399351.1	1e-163	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3556	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-144	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]