PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC3291_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 19918.2 Da PI: 5.0613

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3291_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.3	5.5e-15	4	51	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +e++ r +tfskR++gi KK +E+ Cd+e+a+++fs+ gk +++ RrC3291_p2 4 VEDYEDRMTTFSKRKAGISKKLNEIVAQCDVEAALLVFSQAGKPHTFT 51 79999*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.572	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-10	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.24E-17	2	69	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-17	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-5	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-5	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MREVEDYEDR MTTFSKRKAG ISKKLNEIVA QCDVEAALLV FSQAGKPHTF THPSMEVAVG 60 RVKSHLRNEL SGKDDTNTAG SLVEAYKRQK NEELKKCFVD LAKELEMEEE KEKQLRESKS 120 EKKLEEKWWN DEGSSVEELK QMHQNFVELN VSLCGSASQE KDGDGSSSDL AGRGYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435277.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL23
TrEMBL	A0A078JXZ9	4e-69	A0A078JXZ9_BRANA; BnaCnng72100D protein
TrEMBL	A0A0D3AFP2	4e-69	A0A0D3AFP2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G7J2	4e-69	A0A3P6G7J2_BRAOL; Uncharacterized protein
STRING	Bo1g152200.1	7e-70	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-38	AGAMOUS-like 57