PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3268_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 1019aa MW: 114427 Da PI: 8.2303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3268_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	157	205	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq RrC3268_p2 157 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 205 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.43E-10	152	209	No hit	No description
SuperFamily	SSF47459	2.22E-16	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-16	155	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	157	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF13967	5.6E-38	264	423	IPR032880	Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain
Pfam	PF14703	4.2E-19	444	601	IPR027815	10TM putative phosphate transporter, cytosolic domain
Pfam	PF02714	1.5E-69	612	878	IPR003864	Calcium-dependent channel, 7TM region, putative phosphate

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MGGESNEGEM GFKHGDDESG ISRVGVTSMP LYAKADHFFS SADWDPVVSG GGGGFSSSHY 60 TSMGLDNPGM SCFPHYQPGS GYPDMPASLL PFGDCGGGGH IKKAVEEFQE DPQRGSDHQS 120 QKKQKNDQSK EKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL 180 VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNIDIDRIL AKDTTLESEL 240 QSLYQMGFVS NPSNMSSFSP NNALLTSAGI NIGICVVLVS LYSILRKQPS NYCVYFGRML 300 SGGRVKRNDP RWYERFAPSP SWLVKAWETT EDELLAAAGL DAVVFVRMVI CSIRIFSVVA 360 VVCISFVLPV NYYGQKMEHK EAHLESLSIF TIENLNQRSR WLWVHCISLY IITSAACALL 420 YFEYKTIAKK RLAYMAASSS KPSHFTVLMR AVPQSPDQSY SETVSQYFTN YYAPSYLSHL 480 MVYRDGIIQR LLNDAEKMRQ AIKHVSPDVS CNPSMKSCTF CTGPGPTNSF KIISDEAGGV 540 KKLELGELTT LTTTEEERPV AFVFFKTRYD ALVASEVLHT SNPMLWVADL APEPHDVYWK 600 NLKVPYRQLW MRKIATLVGA VAFMFVFLLP VTGIQGLTQL NTLSKNFPFL RPILKKDLMN 660 RVITGYLPSV ILVLFFYTVP PLMMYFSTLE GCISRSLRKR SACIRVVYFT IWNVFFVNIL 720 SGSVIRQLSI FSSVKDLPAQ LAKAVPTQAG FFMTYCFTSG WAGLACEIIQ PVGLIWNLIS 780 RVIVKNKDAS YETLRFPYHI EIPRLLLFGL LGFTNSVIAP LILPFLLIYF FLAYLIYKNQ 840 IINVYITKYE SGGQYWPIFH NTTIFSLILS QVIALGFFGL KLSTVASGFT IPLILLTLLF 900 SEYCRQRFAP IFQKYPAEIL IAMDRADEIT GKMEELHNNL KTAYSQIPIC SQESSKAGCS 960 PPCSDQELPA SEVLKAENLE AEVIKAFQRS NSHDLEVKSC PSGSPSRYSP GFPEIYKRT

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MGGESNEGEM GFKHGDDESG ISRVGVTSMP LYAKADHFFS SADWDPVVSG GGGGFSSSHY  60
TSMGLDNPGM SCFPHYQPGS GYPDMPASLL PFGDCGGGGH IKKAVEEFQE DPQRGSDHQS  120
QKKQKNDQSK EKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL  180
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNIDIDRIL AKDTTLESEL  240
QSLYQMGFVS NPSNMSSFSP NNALLTSAGI NIGICVVLVS LYSILRKQPS NYCVYFGRML  300
SGGRVKRNDP RWYERFAPSP SWLVKAWETT EDELLAAAGL DAVVFVRMVI CSIRIFSVVA  360
VVCISFVLPV NYYGQKMEHK EAHLESLSIF TIENLNQRSR WLWVHCISLY IITSAACALL  420
YFEYKTIAKK RLAYMAASSS KPSHFTVLMR AVPQSPDQSY SETVSQYFTN YYAPSYLSHL  480
MVYRDGIIQR LLNDAEKMRQ AIKHVSPDVS CNPSMKSCTF CTGPGPTNSF KIISDEAGGV  540
KKLELGELTT LTTTEEERPV AFVFFKTRYD ALVASEVLHT SNPMLWVADL APEPHDVYWK  600
NLKVPYRQLW MRKIATLVGA VAFMFVFLLP VTGIQGLTQL NTLSKNFPFL RPILKKDLMN  660
RVITGYLPSV ILVLFFYTVP PLMMYFSTLE GCISRSLRKR SACIRVVYFT IWNVFFVNIL  720
SGSVIRQLSI FSSVKDLPAQ LAKAVPTQAG FFMTYCFTSG WAGLACEIIQ PVGLIWNLIS  780
RVIVKNKDAS YETLRFPYHI EIPRLLLFGL LGFTNSVIAP LILPFLLIYF FLAYLIYKNQ  840
IINVYITKYE SGGQYWPIFH NTTIFSLILS QVIALGFFGL KLSTVASGFT IPLILLTLLF  900
SEYCRQRFAP IFQKYPAEIL IAMDRADEIT GKMEELHNNL KTAYSQIPIC SQESSKAGCS  960
PPCSDQELPA SEVLKAENLE AEVIKAFQRS NSHDLEVKSC PSGSPSRYSP GFPEIYKRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6oce_A	1e-118	267	944	10	708	stress-gated cation channel 1.2
6oce_B	1e-118	267	944	10	708	stress-gated cation channel 1.2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as an osmosensitive calcium-permeable cation channel. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440312.1	0.0	PREDICTED: CSC1-like protein At1g10090
Swissprot	Q94A87	0.0	CSCL9_ARATH; CSC1-like protein At1g10090
TrEMBL	A0A0D3DNU1	0.0	A0A0D3DNU1_BRAOL; Uncharacterized protein
STRING	Bo8g059090.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-112	bHLH family protein

Publications ? help Back to Top
Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Hou C, et al. DUF221 proteins are a family of osmosensitive calcium-permeable cation channels conserved across eukaryotes. Cell Res., 2014. 24(5): p. 632-5 [PMID:24503647]