PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC324_p7

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 584aa MW: 66119.9 Da PI: 6.5766

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC324_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	394.3	1.3e-120	197	571	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+s d+++a++ L++++ ++s++gd +qRla+yf+eAL+ar+++ ++ l+ a+p+s+ts +++ l+a+klf++v+Pi+ +++aN RrC324_p7 197 LRSLLTQCAQAVASFDHRRATEKLKEIRSNSSSSGDGIQRLAFYFAEALEARITGiISPPLCTAFPSSTTS---MVDILKAYKLFVHVCPIYVADYFAAN 293 6899*************************************************8889999999999998...********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 + I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg ++++eetg+rL++f++ ++vpfefn+ +ak++e+++l+e+ +k RrC324_p7 294 KSIYELALNSTKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFCDMFNVPFEFNF-IAKKWESITLDEITIK 392 *************************************************9*************************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreiv 295 pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e + +ns+ F++rf eal ++s+lfd++++++ +e+ ++r+ +Erell r+++ RrC324_p7 393 PGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFKEALFHFSSLFDMFDTTIQAEDeyKNRALLERELLVRDAM 492 *************************************************************************99998899*********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +v++ egaer++r et+++Wr r+ +aGFkp+++s ++ k ak ++rk + + + ++++ +++++gWk+r ++++S+W+ RrC324_p7 493 SVISSEGAERFARPETYKQWRVRILRAGFKPASVSREILKGAKEIVRKRYHKDFLIDSDGHWMLQGWKGRVIYAFSCWK 571 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.655	171	551	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-118	197	571	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MDAILQVSVD GFRFENGSGS GSCCKPRNNL ETQNQSSPPT DSPSPPSICQ DNAPVLKYIN 60 DMLMDEEDFV EDNLALQAAE RSLHELLHQP SSSSESDDHS TTTTTTTLTD SGESQRKYRH 120 RNDDGEDDLE NGRRNKQPAI FVSEMEELAA KLEHVLLICK SNQEDNSSAT KQSPPPTTNR 180 PKGSSKTLKQ PKAVVDLRSL LTQCAQAVAS FDHRRATEKL KEIRSNSSSS GDGIQRLAFY 240 FAEALEARIT GIISPPLCTA FPSSTTSMVD ILKAYKLFVH VCPIYVADYF AANKSIYELA 300 LNSTKLHIID FGVLYGFQWP CLLLALSKRP GGPPMLRVTG IELPQSGFRP SDRVEETGRR 360 LKRFCDMFNV PFEFNFIAKK WESITLDEIT IKPGETTVVN CIHRLQYTPD ETVSLDSPRD 420 TVLKLFRDIN PDLFVFAEIN GTYNSPFFMT RFKEALFHFS SLFDMFDTTI QAEDEYKNRA 480 LLERELLVRD AMSVISSEGA ERFARPETYK QWRVRILRAG FKPASVSREI LKGAKEIVRK 540 RYHKDFLIDS DGHWMLQGWK GRVIYAFSCW KPAEKSTRDN HIII

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MDAILQVSVD GFRFENGSGS GSCCKPRNNL ETQNQSSPPT DSPSPPSICQ DNAPVLKYIN  60
DMLMDEEDFV EDNLALQAAE RSLHELLHQP SSSSESDDHS TTTTTTTLTD SGESQRKYRH  120
RNDDGEDDLE NGRRNKQPAI FVSEMEELAA KLEHVLLICK SNQEDNSSAT KQSPPPTTNR  180
PKGSSKTLKQ PKAVVDLRSL LTQCAQAVAS FDHRRATEKL KEIRSNSSSS GDGIQRLAFY  240
FAEALEARIT GIISPPLCTA FPSSTTSMVD ILKAYKLFVH VCPIYVADYF AANKSIYELA  300
LNSTKLHIID FGVLYGFQWP CLLLALSKRP GGPPMLRVTG IELPQSGFRP SDRVEETGRR  360
LKRFCDMFNV PFEFNFIAKK WESITLDEIT IKPGETTVVN CIHRLQYTPD ETVSLDSPRD  420
TVLKLFRDIN PDLFVFAEIN GTYNSPFFMT RFKEALFHFS SLFDMFDTTI QAEDEYKNRA  480
LLERELLVRD AMSVISSEGA ERFARPETYK QWRVRILRAG FKPASVSREI LKGAKEIVRK  540
RYHKDFLIDS DGHWMLQGWK GRVIYAFSCW KPAEKSTRDN HIII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-43	181	572	2	379	Protein SCARECROW
5b3h_D	6e-43	181	572	2	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456195.1	0.0	PREDICTED: scarecrow-like protein 11
Swissprot	Q9LTI5	0.0	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	A0A397XTQ2	0.0	A0A397XTQ2_BRACM; Uncharacterized protein
STRING	Bo9g139410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]