PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC3232_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 241aa MW: 28221.6 Da PI: 6.6363 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.9 | 1.1e-13 | 126 | 184 | 4 | 62 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k+ +r+++NRe+A+rsR RK+ i +L++ v +L+ eN++Lk++l+ + + +++ ++ RrC3232_p2 126 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDMENRELKNRLQLFTYQLQRVNTH 184 6999******************************************9998888776655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.5E-13 | 117 | 181 | No hit | No description |
SMART | SM00338 | 4.3E-14 | 123 | 187 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.415 | 125 | 188 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.7E-11 | 126 | 177 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-11 | 127 | 180 | No hit | No description |
CDD | cd14702 | 1.82E-17 | 128 | 173 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 130 | 145 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MSEPGLVNQF SGFQTGFTPW EWDSSDLFPV NQLSLEPAVP SPCYGESDSG LIKINSCFGD 60 IKTGSDEKHT GFNKTEPGFD EVHSSHGVPD EPDSDDPKQW TAIANFDSGE QNHNRTKLIQ 120 PEMTEEKKRK RMESNRESAK RSRMRKQSHI NNLRNQVNQL DMENRELKNR LQLFTYQLQR 180 VNTHNIQLVA EQDILRLRLS EMRRFLMIRQ LQQQQQWELN NRRMVMTEQN PSSIIDHMIY 240 K |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 139 | 144 | KRSRMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480866.1 | 1e-164 | PREDICTED: LOW QUALITY PROTEIN: basic leucine zipper 34 | ||||
TrEMBL | A0A3N6RPC9 | 1e-158 | A0A3N6RPC9_BRACR; Uncharacterized protein | ||||
STRING | Bo7g118720.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-102 | basic leucine-zipper 7 |