PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3217_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 514aa    MW: 56241.6 Da    PI: 6.6638
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3217_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.5e-34336394159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  RrC3217_p1 336 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 394
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-38321396IPR003657WRKY domain
SuperFamilySSF1182901.57E-29328396IPR003657WRKY domain
PROSITE profilePS5081138.629331396IPR003657WRKY domain
SMARTSM007743.1E-39336395IPR003657WRKY domain
PfamPF031064.0E-26337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MNPQVNNERK EFPVDPTARH DSAGGGGGGN GGGGARYKLM SPAKLPISRS TDITIPPGLS  60
PTSFLESPVF ISNIKPEPSP TTGSLFKPRP VHISSISYTG RAIHQDSTFP EQRSSEFEFR  120
PPASTMVYAE LDKHKIEPAV QFQGQSYVSS SHSPSSFTEA AVTSSELSRP TPLSQTTGTS  180
SDIPAGSEQD ESVQNDPRGS TPSVLSDDGY NWRKSYDGQI TDIIYKGTHD HPKPQPGRRN  240
SGGFGVPPAQ EERVEKVSGV YNLSQTIEQT GNPEVPPTIE DGGEVAVSNK NKDDQDEDDP  300
YTKRRRLDGT MEITPLVKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY  360
KCTAPGCPVR KHVERASHDP KAVITTYEGK HNHDVPTSKS SSNHDNQPRF RPGETDSISL  420
NLGVGISSDG PDHASNERQQ QNQQQLINQT HPNGVGFRFV HAAPVSSYYA SLSSGVYQYA  480
PRETQNETQN GDISSLNHSS YPYPHNIGRI QSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38327396877Probable WRKY transcription factor 4
2lex_A4e-38327396877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302306KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931330.0KM593133.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446156.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A398APL70.0A0A398APL7_BRACM; Uncharacterized protein
STRINGBra026414.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein