![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC3150_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 29926.9 Da PI: 9.9404 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.2e-12 | 77 | 124 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL +l + + +K +Ka+iL Av+ + +L RrC3150_p2 77 SKACREKQRRDRLNDKFTELSVILEPG---NPPKTDKAAILVDAVRMVTQL 124 5678**********************8...78**************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.45E-8 | 71 | 129 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-13 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.294 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 76 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-9 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MVSPENPNWI SDLIDAELGS FTIQGPGFSW PLHQQPLGNV SSNSSAGVDG SAGNSEASKE 60 PGSKKRARCE SSSATSSKAC REKQRRDRLN DKFTELSVIL EPGNPPKTDK AAILVDAVRM 120 VTQLRGEAQK LKDSNSSLQD KIKELKTEKN ELRDEKQRLK TEKEKLEQQL KAMNAPQPSF 180 FPAPPMMPTA FASAQGQAPG NKMLLMNLSE ESRYLVQRGH LWSLGIRDQA YARTVLWSGH 240 GRGKLFNPGE KVAICHKLRS DFKFCNIYPS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352726 | 0.0 | AK352726.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C05. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018446126.1 | 1e-144 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-133 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A3P6D1C4 | 1e-131 | A0A3P6D1C4_BRAOL; Uncharacterized protein | ||||
STRING | XP_010448513.1 | 1e-132 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-101 | bHLH family protein |