PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3129_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 335aa    MW: 37778.3 Da    PI: 8.7652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3129_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-081255344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+ ++d  + +a   +  +   +W++Ia  ++ g+tl+q++ ++
       RrC3129_p1 12 SWSRDDDIAFEKALSIYTDEtenRWEKIAGVLP-GKTLEQVIKHY 55
                     7*****************99*************.**********9 PP
2Myb_DNA-binding43.66.6e-14117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W++I+r + ++Rt  q+ s+ qky
       RrC3129_p1 117 AWTPDEHSKFLIGLEKYGKGDWRSISRNLVLTRTSTQVASHAQKY 161
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-4760IPR009057Homeodomain-like
PROSITE profilePS512936.914862IPR017884SANT domain
SMARTSM007173.0E-9961IPR001005SANT/Myb domain
SuperFamilySSF466896.43E-111167IPR009057Homeodomain-like
CDDcd001672.72E-81259No hitNo description
PfamPF002496.7E-61255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-10109163IPR009057Homeodomain-like
PROSITE profilePS5129417.64109166IPR017930Myb domain
SuperFamilySSF466891.94E-15111166IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-15114164IPR006447Myb domain, plants
SMARTSM007175.7E-9114164IPR001005SANT/Myb domain
CDDcd001676.69E-9117162No hitNo description
PfamPF002495.6E-11117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSIGEKTNRG SSWSRDDDIA FEKALSIYTD ETENRWEKIA GVLPGKTLEQ VIKHYEILLR  60
DVMMIESGCV SLPEYDSSEG THAKDTNIPK SCIINRKCEY TQDCKPILKQ KRRKGIAWTP  120
DEHSKFLIGL EKYGKGDWRS ISRNLVLTRT STQVASHAQK YFARLNSKNK NKMRQRIHDV  180
DAGESNNTST MQRPDTSQNA RAIQATSQDH HPTYNTPTIW NTQTTLQQPL ERPMYGTPTT  240
WNIQAASQPS VDIPIYDTHI VDQSLVGHMV SPFGSNMNRL APSHMAYGVQ HHSAPYSSFS  300
SAPYSSFSSA PYSSVLSAPF NMAASYNMTY APTYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-141085883RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479282.10.0PREDICTED: transcription factor DIVARICATA-like
TrEMBLM4CZQ20.0M4CZQ2_BRARP; Uncharacterized protein
STRINGBra009699.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-108Homeodomain-like transcriptional regulator