PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3117_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 633aa    MW: 69872.9 Da    PI: 9.8271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3117_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.7e-541152421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 +ppGfrFhPtdeel+++yL kkv ++++++  +i++vd++k+ePw+Lp+k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e++s+ +++
  RrC3117_p3 115 MPPGFRFHPTDEELITYYLLKKVLDSNFSC-AAISQVDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSkTKS 212
                 79****************************.88***************99999****************************************985667 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 l g+kktLvfykgrapkgek+ Wvmheyrl
  RrC3117_p3 213 LLGMKKTLVFYKGRAPKGEKSCWVMHEYRL 242
                 7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-60110267IPR003441NAC domain
PROSITE profilePS5100557.262115267IPR003441NAC domain
PfamPF023654.8E-28116242IPR003441NAC domain
HamapMF_0050014.836516612IPR002583Ribosomal protein S20
TIGRFAMsTIGR000299.1E-15521608IPR002583Ribosomal protein S20
Gene3DG3DSA:1.20.58.1103.6E-35522625IPR002583Ribosomal protein S20
SuperFamilySSF469921.1E-23523625IPR002583Ribosomal protein S20
PfamPF016497.7E-20523609IPR002583Ribosomal protein S20
ProDomPD0042310.003537599IPR002583Ribosomal protein S20
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MKQTLKIALR LLDVYVSVTL RDANDSLICA LIPLLMRRNS TMFQDKNFSH EIRWRATGVL  60
ASSISEKPII DTPGEASDDP AKIHVPKDVE LLPTMDMDAF SGWERSSRYE DETIMPPGFR  120
FHPTDEELIT YYLLKKVLDS NFSCAAISQV DLNKSEPWEL PEKAKMGEKE WYFFTLRDRK  180
YPTGLRTNRA TEAGYWKATG KDREIKSSKT KSLLGMKKTL VFYKGRAPKG EKSCWVMHEY  240
RLDGKFSYRY ITSSAKDEWV LSKVCLKSSV VSRETKLVSS SSSSSPVSVA GEVSSGVNVS  300
SSVIAPIIDA FATEHVSCFS NTSDATAHHA DASFPTYLPA PPPLLPRQLR PIGGDNDVAF  360
GQFVDLGSSG QFNVDVDDAA FFSPNLPSLP PTVLLPPLYG GGSALILDNI SFFLDNTSPR  420
EPITRAENWC WFGSRRGSMA TLVQCLSSCA TLNPKFKSLS LNGVLSPTSS LSTRRGVCSS  480
SSLSFAQSVS QCVAFSSGNM WVEKNKPARQ SIVCEAAPTK KADSAAKRAR QAEKRRVYNK  540
SKKSEARTRM KKVLEALDGL KKKTDAVPDE IVTVEKLIGE AYSAIDKAVK VRALHKNTGA  600
RRKSRLARRK KAVEIHHGWY VPAAAAEAVT MAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v61_AT1e-854396331202Ribosomal Protein S20
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667540.0KC966754.1 Brassica napus NAC transcription factor 54-1 (NAC54-1.1) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.11e-130NAC family protein