PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC309_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 894aa    MW: 99321.4 Da    PI: 8.0234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC309_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-14305347648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl
        RrC309_p2 305 QEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 347
                      7****************************************97 PP
2Myb_DNA-binding50.35.6e-16355396346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++++E+el++++++  G++ W++Iar+++ gRt++++k++w++
        RrC309_p2 355 SFSPQEEELIIQCHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 396
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007025.5E-5164261IPR006620Prolyl 4-hydroxylase, alpha subunit
PROSITE profilePS5147113.266140262IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF136405.8E-20144261IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF015492.8E-4274298IPR003582ShKT domain
SMARTSM007171.2E-9299349IPR001005SANT/Myb domain
PROSITE profilePS5129411.295304347IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-21305354IPR009057Homeodomain-like
CDDcd001679.79E-10305347No hitNo description
PfamPF002491.8E-12305347IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-25305394IPR009057Homeodomain-like
PROSITE profilePS5129423.999348402IPR017930Myb domain
SMARTSM007175.9E-15352400IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-22355403IPR009057Homeodomain-like
PfamPF002496.5E-14355396IPR001005SANT/Myb domain
CDDcd001678.69E-11355398No hitNo description
Gene3DG3DSA:3.40.50.1501.7E-37708883IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF036021.9E-39717885No hitNo description
SuperFamilySSF533352.23E-21717879IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDSRNFLALS LSLILIFPPI SSASIRFLPR WSSNNREGSV IKQKTSGSSL VIDPSRVTQL  60
SWTPRVFLYK GLLTDEECDH FINLAKGKLE KSMVADNDSG ESVESEVRTS SGMFLSKRQD  120
EVVANVEAKL AAWTFLPEEN GESMQILHYE NGQKYEPHFD YFHDQVNLQL GGHRIATVLM  180
YLSNVKKGGE TVFPMWKGAT AQPKDDSWTQ CAKQGYAVKP RKGDALLFFN LHPNATTDPS  240
SLHGSCPVVE GEKWSATRWI HVKSFERPVS RTTGCVDENE SCEKWAKAGE CQKNPTYMMG  300
SETDQEEDAK ILAYVAIHGV GNWSLIPKKA GLNRCGKSCR LRWTNYLRPD LKHDSFSPQE  360
EELIIQCHRI IGSRWSSIAR KLPGRTDNDV KNHWNTKLKK RLVKMGIDPV THKPVSQVLT  420
EFRNISGHGN SSEPFVRNFK TEPSNNNSIL TQSNSAWEMI RNNTTSHESY HNSPMIFTNP  480
TSSSEFQTTA FHFSNHPPLN GTTSSCSSSS SSASITQPNQ GAQVFCWSDY LLSDPVLPLS  540
SQTQVVGSSA TSNLTFARKE NFNSQGECSS QKTASKASGT CHSASSFVDE ILDKDQEMLS  600
KVETFRAMAV VLSSPIVSPL RINIDMSKNL GVSYSSFLPS VPTPLRTRKP VVVVSSRKNI  660
GTGLASEDKK LLLERYGYDA NEFASSQSKK TRRKEEERNS GKEEEVAVQP RTTHRLLQVL  720
AGTAKRKKLL SLKGMDVRPM MEVVKGAAFG ILQAAGGCPT SLRPGRWLDL YSGTGSVGIE  780
AISRGCSQAH FVEMDPWVVS NVLQPNLEHT GFVEASVIHT ARVENFLERA DKLLGIVTPP  840
YMEVDYEVLM DQISKSAAIG ENTFIVVEYP SRTTMLDSCG CLEKVIFFAD VFVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jig_A2e-775526211217PROLYL-4 HYDROXYLASE
2jig_B2e-775526211217PROLYL-4 HYDROXYLASE
3gze_A2e-775526212218Predicted protein
3gze_B2e-775526212218Predicted protein
3gze_C2e-775526212218Predicted protein
3gze_D2e-775526212218Predicted protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HEC50.0A0A498HEC5_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM383522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-140MYB family protein