PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3079_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23387 Da    PI: 9.4641
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3079_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.4e-225199149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i ++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y +
  RrC3079_p2 51 KEITEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99
                67999******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-2443102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.10943103IPR002100Transcription factor, MADS-box
CDDcd002663.15E-2544111No hitNo description
SuperFamilySSF554553.66E-2244116IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-184565IPR002100Transcription factor, MADS-box
PfamPF003191.1E-215399IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-186580IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-1880101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEEVRETLST TFLKPNDQFQ SPILLVTQTK KELTTTRTPK TSRGRQKIEI KEITEDSKRH  60
VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG QVDSLMDKYL RKIPVNLEVC  120
SGDDSAEEEG RPLWKRPVES VPEEELEEYI MAMSVLRDKI GKKINDMGSI VPAWPINMMG  180
WKPQMDIQSM GDVTDGVTRC RLGQNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458612.11e-148PREDICTED: MADS-box transcription factor 23
TrEMBLA0A397Y9271e-131A0A397Y927_BRACM; Uncharacterized protein
STRINGBra026674.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.13e-72M-type_MADS family protein